Schema for ceBlastTab
  Database: hg19    Primary Table: ceBlastTab    Row Count: 4,948   Data last updated: 2013-06-17
Format description: Blast alignments of C. elegans genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc003trd.3varchar(255) values Name of sequence in this assembly (query)
target C05D11.10varchar(255) values Name of sequence in other assembly (target)
identity 30.7float range Percent identity
aliLength 114int(10) unsigned range Length of alignment
mismatch 70int(10) unsigned range Number of mismatches
gapOpen 3int(10) unsigned range Number of gap openings
qStart 1int(10) unsigned range Start in query (0 based)
qEnd 107int(10) unsigned range End in query (non-inclusive)
tStart 4int(10) unsigned range Start in target (0 based)
tEnd 117int(10) unsigned range End in target (non-inclusive)
eValue 0.00000006double range Expectation value
bitScore 52.4double range Bit score

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via ceBlastTab.query)
      hg19.ccdsKgMap.geneId (via ceBlastTab.query)
      hg19.dmBlastTab.query (via ceBlastTab.query)
      hg19.drBlastTab.query (via ceBlastTab.query)
      hg19.foldUtr3.name (via ceBlastTab.query)
      hg19.foldUtr5.name (via ceBlastTab.query)
      hg19.gnfAtlas2Distance.query (via ceBlastTab.query)
      hg19.gnfAtlas2Distance.target (via ceBlastTab.query)
      hg19.gnfU95Distance.query (via ceBlastTab.query)
      hg19.gnfU95Distance.target (via ceBlastTab.query)
      hg19.humanHprdP2P.query (via ceBlastTab.query)
      hg19.humanHprdP2P.target (via ceBlastTab.query)
      hg19.humanVidalP2P.query (via ceBlastTab.query)
      hg19.humanVidalP2P.target (via ceBlastTab.query)
      hg19.humanWankerP2P.query (via ceBlastTab.query)
      hg19.humanWankerP2P.target (via ceBlastTab.query)
      hg19.keggPathway.kgID (via ceBlastTab.query)
      hg19.kgAlias.kgID (via ceBlastTab.query)
      hg19.kgColor.kgID (via ceBlastTab.query)
      hg19.kgProtAlias.kgID (via ceBlastTab.query)
      hg19.kgProtMap2.qName (via ceBlastTab.query)
      hg19.kgSpAlias.kgID (via ceBlastTab.query)
      hg19.kgTargetAli.qName (via ceBlastTab.query)
      hg19.kgTxInfo.name (via ceBlastTab.query)
      hg19.kgXref.kgID (via ceBlastTab.query)
      hg19.knownBlastTab.query (via ceBlastTab.query)
      hg19.knownBlastTab.target (via ceBlastTab.query)
      hg19.knownCanonical.transcript (via ceBlastTab.query)
      hg19.knownGene.name (via ceBlastTab.query)
      hg19.knownGeneMrna.name (via ceBlastTab.query)
      hg19.knownGenePep.name (via ceBlastTab.query)
      hg19.knownGeneTxMrna.name (via ceBlastTab.query)
      hg19.knownGeneTxPep.name (via ceBlastTab.query)
      hg19.knownIsoforms.transcript (via ceBlastTab.query)
      hg19.knownToAllenBrain.name (via ceBlastTab.query)
      hg19.knownToEnsembl.name (via ceBlastTab.query)
      hg19.knownToGnfAtlas2.name (via ceBlastTab.query)
      hg19.knownToHInv.name (via ceBlastTab.query)
      hg19.knownToHprd.name (via ceBlastTab.query)
      hg19.knownToKeggEntrez.name (via ceBlastTab.query)
      hg19.knownToLocusLink.name (via ceBlastTab.query)
      hg19.knownToLynx.name (via ceBlastTab.query)
      hg19.knownToMupit.name (via ceBlastTab.query)
      hg19.knownToNextProt.name (via ceBlastTab.query)
      hg19.knownToPfam.name (via ceBlastTab.query)
      hg19.knownToRefSeq.name (via ceBlastTab.query)
      hg19.knownToSuper.gene (via ceBlastTab.query)
      hg19.knownToTreefam.name (via ceBlastTab.query)
      hg19.knownToU133.name (via ceBlastTab.query)
      hg19.knownToU133Plus2.name (via ceBlastTab.query)
      hg19.knownToU95.name (via ceBlastTab.query)
      hg19.knownToVisiGene.name (via ceBlastTab.query)
      hg19.knownToWikipedia.name (via ceBlastTab.query)
      hg19.mmBlastTab.query (via ceBlastTab.query)
      hg19.rnBlastTab.query (via ceBlastTab.query)
      hg19.scBlastTab.query (via ceBlastTab.query)
      hg19.ucscScop.ucscId (via ceBlastTab.query)
      knownGeneV39.bioCycPathway.kgID (via ceBlastTab.query)
      knownGeneV39.ceBlastTab.query (via ceBlastTab.query)
      knownGeneV39.dmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.drBlastTab.query (via ceBlastTab.query)
      knownGeneV39.foldUtr3.name (via ceBlastTab.query)
      knownGeneV39.foldUtr5.name (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via ceBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via ceBlastTab.query)
      knownGeneV39.kgAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgColor.kgID (via ceBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via ceBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via ceBlastTab.query)
      knownGeneV39.kgXref.kgID (via ceBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.query (via ceBlastTab.query)
      knownGeneV39.knownBlastTab.target (via ceBlastTab.query)
      knownGeneV39.knownCanonical.protein (via ceBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via ceBlastTab.query)
      knownGeneV39.knownCds.name (via ceBlastTab.query)
      knownGeneV39.knownGene.name (via ceBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via ceBlastTab.query)
      knownGeneV39.knownGenePep.name (via ceBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via ceBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via ceBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via ceBlastTab.query)
      knownGeneV39.knownToHprd.name (via ceBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via ceBlastTab.query)
      knownGeneV39.knownToMrna.name (via ceBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via ceBlastTab.query)
      knownGeneV39.knownToMupit.name (via ceBlastTab.query)
      knownGeneV39.knownToPfam.name (via ceBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via ceBlastTab.query)
      knownGeneV39.knownToSuper.gene (via ceBlastTab.query)
      knownGeneV39.knownToTag.name (via ceBlastTab.query)
      knownGeneV39.knownToU133.name (via ceBlastTab.query)
      knownGeneV39.knownToU95.name (via ceBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via ceBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via ceBlastTab.query)
      knownGeneV39.mmBlastTab.query (via ceBlastTab.query)
      knownGeneV39.rnBlastTab.query (via ceBlastTab.query)
      knownGeneV39.scBlastTab.query (via ceBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc003trd.3C05D11.1030.7114703110741170.0000000652.4
uc003uid.3ZC506.4b40.488674431630834338901e-177620
uc010fpr.3Y57G11A.325224130722236522480.0000000000367.4
uc010fox.2R10E4.2a60.3417966258235772532e-47185
uc003tqg.3F32D8.686.5767900670676.0000000000000004e-1885.1
uc003szf.3B0250.554.5829513224233542995.9999999999999994e-86313
uc010fot.2W04E12.826.6230817913215487193163e-23107
uc003syn.2C07H6.765.12862621752601472303e-26115
uc003szd.1M142.473.6876191181256661426.0000000000000005e-25111
uc003sxu.3K08H2.634.3113781235172421700.0000000000000972.8

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.