Schema for mrnaOrientInfo
  Database: felCat4    Primary Table: mrnaOrientInfo    Row Count: 4,034   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 602smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrA1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2324084int(10) unsigned range Start position in chromosome
chromEnd 2329866int(10) unsigned range End position in chromosome
name JV728505varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat4.all_mrna.qName (via mrnaOrientInfo.name)
      felCat4.refFlat.name (via mrnaOrientInfo.name)
      felCat4.refGene.name (via mrnaOrientInfo.name)
      felCat4.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
602chrA123240842329866JV72850530000
638chrA170002417008246JV72893540000
645chrA179158017966908JV72899670100
649chrA184924888492591JV72924300000
652chrA188114488816794EU28655210000
671chrA11134562611350181JV72855830000
85chrA11346358913537868AB1079551414000
688chrA11354256913544474JV72929510000
688chrA11354258613544348JV72929410000
92chrA12055869420838889JV72907930000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.