Schema for mrnaOrientInfo
  Database: xenLae2    Primary Table: mrnaOrientInfo    Row Count: 38,192   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 95705int(10) unsigned range Start position in chromosome
chromEnd 316647int(10) unsigned range End position in chromosome
name L15586varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      xenLae2.all_mrna.qName (via mrnaOrientInfo.name)
      xenLae2.refFlat.name (via mrnaOrientInfo.name)
      xenLae2.refGene.name (via mrnaOrientInfo.name)
      xenLae2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chr1L95705316647L1558600000
73chr1L95706316624L1558700000
73chr1L95715331795L1557410000
585chr1L9571896195L1558010000
585chr1L95718112279L1558210000
73chr1L99927191126L1558000000
586chr1L190646190824L1558500000
73chr1L205622331799L1557510000
586chr1L205635205839L1558300000
73chr1L226914325742L1558300000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.