Schema for mrnaOrientInfo
  Database: ponAbe2    Primary Table: mrnaOrientInfo    Row Count: 8,978   Data last updated: 2020-08-23
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 146852int(10) unsigned range Start position in chromosome
chromEnd 162199int(10) unsigned range End position in chromosome
name CR859251varchar(255) values Accession of EST
intronOrientation 6smallint(6) range Orientation of introns with respect to EST
sizePolyA 135smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 161smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      ponAbe2.all_mrna.qName (via mrnaOrientInfo.name)
      ponAbe2.refFlat.name (via mrnaOrientInfo.name)
      ponAbe2.refGene.name (via mrnaOrientInfo.name)
      ponAbe2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr1146852162199CR859251613501610
602chr122728462323648CR860933111000
76chr140060504169588CR8584676160290
77chr144375814464837CR8614023170400
643chr176664997724781CR85982413160350
644chr177373867759529CR8587319130360
10chr194204329958472CR859367317000
673chr11157110711607906CR8597388150000
10chr11252082212585062CR8598821913000
691chr11389447414002652CR86065730000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.