Schema for mrnaOrientInfo
  Database: danRer11    Primary Table: mrnaOrientInfo    Row Count: 57,446   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 6647int(10) unsigned range Start position in chromosome
chromEnd 11761int(10) unsigned range End position in chromosome
name BC059530varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 21smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 40smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        danRer11.all_mrna.qName (via mrnaOrientInfo.name)
      danRer11.refFlat.name (via mrnaOrientInfo.name)
      danRer11.refGene.name (via mrnaOrientInfo.name)
      danRer11.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr1664711761BC0595305210400
585chr1664911779AY099532500170
585chr11198616373BC0531149310530
585chr12782734330BC15355610240490
585chr12784334330BC09335110190440
585chr12788634245BC164450100000
585chr13673339191BC0927294590840
585chr13931344484BC066403522000
585chr13932444525BC0567078430660
585chr14483849831BC0533147600830

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.