Schema for wgEncodeGencodeCompV27
  Database: hg38    Primary Table: wgEncodeGencodeCompV27    Row Count: 197,629   Data last updated: 2017-09-15
Format description: A gene prediction with some additional info.
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENST00000619216.1varchar(255) values Name of gene (usually transcript_id from GTF)
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 17368int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 17436int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 17368int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 17368int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 17368,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 17436,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range score
name2 MIR6859-1varchar(255) values Alternate name (e.g. gene_id from GTF)
cdsStartStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat noneenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames -1,longblob   Exon frame {0,1,2}, or -1 if no frame for exon

Connected Tables and Joining Fields
        hg38.wgEncodeGencodeAttrsV27.transcriptId (via wgEncodeGencodeCompV27.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585ENST00000619216.1chr1-17368174361736817368117368,17436,0MIR6859-1nonenone-1,
585ENST00000473358.1chr1+29553310972955329553329553,30563,30975,30039,30667,31097,0MIR1302-2HGnonenone-1,-1,-1,
585ENST00000469289.1chr1+30266311093026630266230266,30975,30667,31109,0MIR1302-2HGnonenone-1,-1,
585ENST00000607096.1chr1+30365305033036530365130365,30503,0MIR1302-2nonenone-1,
585ENST00000417324.1chr1-34553360813455334553334553,35276,35720,35174,35481,36081,0FAM138Anonenone-1,-1,-1,
585ENST00000461467.1chr1-35244360733524435244235244,35720,35481,36073,0FAM138Anonenone-1,-1,
585ENST00000641515.1chr1+65418715856909070008365418,65519,69036,65433,65573,71585,0OR4F5cmplcmpl-1,-1,0,
585ENST00000335137.4chr1+69054701086909070008169054,70108,0OR4F5cmplcmpl0,
585ENST00000466430.5chr1-892941209328929489294489294,92090,112699,120774,91629,92240,112804,120932,0AL627309.1nonenone-1,-1,-1,-1,
585ENST00000495576.1chr1-89550911058955089550289550,90286,90050,91105,0AL627309.3nonenone-1,-1,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.