Schema for mrnaOrientInfo
  Database: gorGor4    Primary Table: mrnaOrientInfo    Row Count: 1,230   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 642smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 7499132int(10) unsigned range Start position in chromosome
chromEnd 7499374int(10) unsigned range End position in chromosome
name AY827149varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gorGor4.all_mrna.qName (via mrnaOrientInfo.name)
      gorGor4.refFlat.name (via mrnaOrientInfo.name)
      gorGor4.refGene.name (via mrnaOrientInfo.name)
      gorGor4.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
642chr174991327499374AY82714901000
642chr174991327499374AY82715001000
652chr188344728834582FV52620000000
652chr188345398834561FV52461700000
652chr188345398834561FW31193400000
778chr12535327025391512L3705261000
778chr12535327025391512L3705361000
778chr12536898625391512AF20136930000
779chr12543868725493008L3705240000
885chr13938413839384354DQ88566101000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.