Schema for mrnaOrientInfo
  Database: gasAcu1    Primary Table: mrnaOrientInfo    Row Count: 2,786   Data last updated: 2018-07-28
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 69454int(10) unsigned range Start position in chromosome
chromEnd 74548int(10) unsigned range End position in chromosome
name BT027618varchar(255) values Accession of EST
intronOrientation 8smallint(6) range Orientation of introns with respect to EST
sizePolyA 26smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 46smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gasAcu1.all_mrna.qName (via mrnaOrientInfo.name)
      gasAcu1.refFlat.name (via mrnaOrientInfo.name)
      gasAcu1.refGene.name (via mrnaOrientInfo.name)
      gasAcu1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chrI6945474548BT0276188260460
586chrI146369147512KT23575610000
586chrI150454155286KT23574810000
586chrI153164155407BT0279211270480
586chrI200011206701BT0286837240460
586chrI204740206695AB910027200160
587chrI356230359229BT0274991280520
587chrI356907358285AY184358250280
587chrI380273381945BT0287223290510
588chrI475017481066BT02742415240420

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.