Schema for mrnaOrientInfo
  Database: droMoj2    Primary Table: mrnaOrientInfo    Row Count: 46   Data last updated: 2017-10-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_1769varchar(255) values Reference sequence chromosome or scaffold
chromStart 4641int(10) unsigned range Start position in chromosome
chromEnd 4742int(10) unsigned range End position in chromosome
name EU417444varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 17smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droMoj2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_176946414742EU417444000017
585scaffold_3345476770EU33414002000
585scaffold_38190820EU5954031180290
585scaffold_390328415938EU5954032180290
585scaffold_4151455585EU51447102000
585scaffold_421801044EU5954030180290
585scaffold_43357542276EU5954031180290
585scaffold_4673155398EU417444120017
585scaffold_48587923198EU417444020017
585scaffold_495342994982EU5954030180290

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.