Schema for mrnaOrientInfo
  Database: droAna2    Primary Table: mrnaOrientInfo    Row Count: 53   Data last updated: 2017-10-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_1033varchar(255) values Reference sequence chromosome or scaffold
chromStart 2393int(10) unsigned range Start position in chromosome
chromEnd 2564int(10) unsigned range End position in chromosome
name EU417447varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        droAna2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_103323932564EU41744701000
701scaffold_129161521898415220277DQ7789750130370
585scaffold_131159416795943EU51446812000
585scaffold_131175408160299AM08699850000
585scaffold_131224099241933EU36285502000
585scaffold_131403634438787EU51446802000
585scaffold_131594738348171EU41744713000
585scaffold_131594778848171EU41744610000
587scaffold_13164275041277296EU59539920000
585scaffold_13174580341343EU41744703000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.