Schema for xenoRefFlat
  Database: calMil1    Primary Table: xenoRefFlat    Row Count: 409,319   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName GAPVD1varchar(255) values Name of gene as it appears in genome browser.
name NM_001330778varchar(255) values Name of gene
chrom KI636112varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 372847int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 372943int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 372847int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 372943int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 372847,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 372943,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        calMil1.xenoRefGene.name (via xenoRefFlat.name)
      calMil1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
GAPVD1NM_001330778KI636112-3728473729433728473729431372847,372943,
sult2st3NM_001078168KI635925+10569146001056914600210569,14543,10650,14600,
zfx.SNM_001088170KI635956+2484152249735424841522497354102484152,2484244,2484319,2484517,2486732,2490687,2492823,2495237,2496176,2496388,2484200,2484310,2484376,2484604,2486817,2490806,2492956,2495378,2496382,2497354,
mespa.LNM_001088172KI636065-4844594846424844594846421484459,484642,
rfc1NM_001280932KI635865-999469799997799994697999977989994697,9995226,9995455,9996104,9997176,9997750,9998412,9999614,9994787,9995364,9995521,9996152,9997254,9997885,9998435,9999779,
abat.SNM_001089641KI635884-5608388564712056270125647120155608388,5627012,5627381,5628229,5629439,5631776,5633135,5633707,5634053,5634072,5635686,5641804,5641865,5644132,5647027,5608408,5627134,5627493,5628373,5629601,5631905,5633284,5633768,5634056,5634135,5635767,5641807,5641912,5644253,5647120,
Fur2NM_001169303KI635918-9417649452059417649452058941764,942129,942504,943056,943064,943676,943722,945094,941818,942206,942699,943058,943235,943722,943767,945205,
Fur2NM_001169303KI635923+396953840373553969538403735563969538,3995022,3999775,4012929,4016187,4037265,3969649,3995110,3999930,4013122,4016262,4037355,
CG16952NM_001169293KI635968-204020820493692040208204936972040208,2041355,2043463,2048499,2048775,2049051,2049123,2040241,2041507,2043548,2048562,2048850,2049099,2049369,
mgl-1NM_001313459KI638189+412671384126713824126,6964,4387,7138,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.