Schema for mrnaOrientInfo
  Database: calJac3    Primary Table: mrnaOrientInfo    Row Count: 1,885   Data last updated: 2020-08-18
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1133smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 71829549int(10) unsigned range Start position in chromosome
chromEnd 71836477int(10) unsigned range End position in chromosome
name EF215086varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        calJac3.all_mrna.qName (via mrnaOrientInfo.name)
      calJac3.refFlat.name (via mrnaOrientInfo.name)
      calJac3.refGene.name (via mrnaOrientInfo.name)
      calJac3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1133chr17182954971836477EF21508630000
1150chr17417333774178148EF21484240000
1381chr1104360212104361737EF21517410000
1402chr1107193107107205629EF44480750000
1403chr1107255403107299932EF44480840000
1524chr1123132815123133386AB57124400000
1611chr1134489882134491758EF21538910000
1625chr1136437155136439290EF21511110000
1628chr1136810653136812106EF21492420000
1628chr1136810653136812106EF21531120000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.