Schema for xenoRefSeqAli
  Database: balAcu1    Primary Table: xenoRefSeqAli    Row Count: 469,047   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 191int(10) unsigned range Number of bases that match that aren't repeats
misMatches 40int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 4100int(10) unsigned range Number of bases inserted in target
strand ++char(2) values + or - for strand. First character query, second target (optional)
qName NM_030172varchar(255) values Query sequence name
qSize 2069int(10) unsigned range Query sequence size
qStart 74int(10) unsigned range Alignment start position in query
qEnd 305int(10) unsigned range Alignment end position in query
tName ATDI01000082varchar(255) values Target sequence name
tSize 6099int(10) unsigned range Target sequence size
tStart 933int(10) unsigned range Alignment start position in target
tEnd 5264int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 87,96,48,longblob   Size of each block
qStarts 74,161,257,longblob   Start of each block in query.
tStarts 933,1703,5216,longblob   Start of each block in target.

Connected Tables and Joining Fields
        balAcu1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      balAcu1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58519140000024100++NM_030172206974305ATDI0100008260999335264387,96,48,74,161,257,933,1703,5216,
58574298001030512544++NM_174456294615822727ATDI010001044121313871473,18,18,48,12,23,93,49,54,11,36,223,62,120,1582,1661,1685,1743,1808,1826,1850,2115,2164,2218,2240,2278,2545,2607,3,78,104,165,227,246,269,764,814,870,891,930,1202,1267,
585150519500252153262475+-NM_001111289614122586111ATDI0100065194005225940030241,47,33,21,11,25,50,93,64,17,36,24,16,40,42,188,148,72,72,44,40,57,114,13,16,79,9,29,23,36,2258,2504,2563,2615,2636,2650,2675,2742,2870,2934,2959,3010,3035,3057,3116,3186,3384,3667,3874,3947,3991,4043,4116,4456,4552,486 ...0,241,299,344,366,377,403,474,609,674,700,750,776,793,851,916,1118,1389,1620,1692,1739,1781,1859,2277,2377,2688,2793,2806,2999,4 ...
585150519500252153262475+-NM_001111290611422316084ATDI0100065194005225940030241,47,33,21,11,25,50,93,64,17,36,24,16,40,42,188,148,72,72,44,40,57,114,13,16,79,9,29,23,36,2231,2477,2536,2588,2609,2623,2648,2715,2843,2907,2932,2983,3008,3030,3089,3159,3357,3640,3847,3920,3964,4016,4089,4429,4525,483 ...0,241,299,344,366,377,403,474,609,674,700,750,776,793,851,916,1118,1389,1620,1692,1739,1781,1859,2277,2377,2688,2793,2806,2999,4 ...
585150519500252153262475+-NM_016739618122986151ATDI0100065194005225940030241,47,33,21,11,25,50,93,64,17,36,24,16,40,42,188,148,72,72,44,40,57,114,13,16,79,9,29,23,36,2298,2544,2603,2655,2676,2690,2715,2782,2910,2974,2999,3050,3075,3097,3156,3226,3424,3707,3914,3987,4031,4083,4156,4496,4592,490 ...0,241,299,344,366,377,403,474,609,674,700,750,776,793,851,916,1118,1389,1620,1692,1739,1781,1859,2277,2377,2688,2793,2806,2999,4 ...
768819991001982956138554++NM_032221107195210691KI53837514049408345398436023486342,383,129,148,150,63,59,118,87,135,122,244,177,147,253,211,196,164,181,111,203,200,160,90,104,130,59,63,217,211,458,282,292,24, ...52,94,486,615,763,913,976,1035,1153,1240,1375,1497,1741,1918,2065,2318,2529,2725,2889,3070,3181,3384,3584,3744,3834,3938,4068,41 ...3453984,3471151,3471534,3486651,3488608,3502712,3503594,3504327,3508555,3508844,3512913,3514611,3516047,3516887,3519989,3521339, ...
58583379001117213227+-NM_001012185331322053289ATDI0100065194008261940017185,102,33,21,10,158,82,31,57,12,10,32,13,36,13,88,29,2205,2390,2504,2554,2575,2588,2799,2910,2942,3040,3053,3063,3097,3122,3158,3171,3260,0,186,299,344,366,376,591,704,735,837,851,862,895,916,994,1022,1110,
58510534300439437+-NM_001076062338622043339ATDI010006519400826794008344,33,25,131,209,10,123,221,2204,2550,2586,2611,2772,2981,2995,3118,0,344,377,403,567,777,787,912,
58526853000013+-NM_0010395081387494815ATDI0100066163902365602279,42,494,773,5830,6112,
58626762260061712343946+-NM_0010333142673140KI537488384852714544719229525166,89,178,99,60,40,163,142,84,162,80,102,84,150,222,77,136,91,194,69,171,30,138,82,93,67,233,322,502,601,661,701,864,1006,1090,1252,1332,1450,1534,1684,1906,1983,2119,2210,2404,2532,2705,2814,2965,3047,3656232,3664909,3668381,3678410,3680254,3681168,3681469,3686108,3688604,3690168,3690707,3691449,3691705,3694249,3694605,3696561, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.