Schema for genscanPep
  Database: hg19    Primary Table: genscanPep    Row Count: 105,170   Data last updated: 2010-08-03
Format description: A predicted peptide - linked to a predicted gene.
fieldexampleSQL type info description
name chr1_0.1varchar(255) values Name of gene - same as in genePred
seq MTPVRMQHSLAGQTYAVPFIQPDLRRE...longblob   Peptide sequence

Connected Tables and Joining Fields
        hg19.genscan.name (via genscanPep.name)

Sample Rows
 
nameseq
chr1_0.1MTPVRMQHSLAGQTYAVPFIQPDLRREEAVQQMADALQYLQKVSGDIFSRAYAPTEGRVSTQGRTRLPWELGSIKTACAGGPFTADEGLSPARKDGAHAGWWSRFLTGRRCIRHLGLGHQEPATGMSG ...
chr1_0.2MENADTARLFGTAVYTFEVLGALPPDRSPTPRSRVSPGVTSLAVGPGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRDPAEPGSLRPTSLGFPARAGQGRVQGAAPGRKLR ...
chr1_0.3MSQCIWPPYFLLLAQCNGSISGTANERDAQDKKQDLALSLRMEFSGPIMAHYSLKLPGSSNPTMSAFPVAGTTELMLGRVPGDRRTQMGFGNRFGYPRSSAELLAMGYGMLVISRISAAALDSHRSTN ...
chr1_0.4MMIIPHLLRDKDQRATTATSPRTCQCWGTENEGVQLWPSQSSGGDETHLPLSLWARLMPGASVDRGHAPGLPKLERAARLRWPGAYLGVRTFAVSGNAYWLPWDGGRCRRCSAYFLAEDCGSSQGDFT ...
chr1_0.5MSLTFRRPKTLRLRRQPRYPRKSTPRRNKLGHYAIIKFPLTTESAVKKIEENNTLVFTVDVKANKHQIRQAVKKLYDSDVAKVTTLICPDKEKAYVRLAPDYDAFDVVTKLGSPKLSPAG
chr1_0.6MAELPPQHTGSRQEAVASPSSMAYSHISPVNLLLPGGRQSLSPSVSANQLTCCFLEEDSHSVSANPVDRRHAGLLRIKSKLPTLEHQVFVLCSLLLYLTCNQHHSHIHMLLTVYQHEQEDTQSICFKA ...
chr1_0.7MPAEAHALGAKWLLPLTTVKTGVGRVVLDALEQGSPTPEPWSRKEPHSRSLSRPRTFSSQPLQTKLMTHNGLFRPIPYVTAASADEPTASQQPPQAQLHRYNGLFRPSSCLPAFSPGSELSHLCLTVA ...
chr1_0.8MNQIQYGITADIHTELHKTGRELLITAPEGSGQSDALEIRECQTEITRPGELPPMPHEAQQPASHSVASNQRKQPAKLAAVAHERPPGGTGSVDPGRPPGATCPESPGPATPHTLGVVEPGKSSPPTM ...
chr1_0.9MIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLACTDTYRLQFMVTVNSGFICV ...
chr1_0.10MHKDQALIRSSGRKISETEYQLNEINQEDKIREKRMKRNEQSLQEIWDYVKRPNLRLIAVPESDGENGTKLENTLQDIIQENFPNLARQANIQIQKYGEHHKDTPQEKQPQDT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.