Schema for mrnaOrientInfo
  Database: xenTro1    Primary Table: mrnaOrientInfo    Row Count: 25,748   Data last updated: 2020-05-09
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_1varchar(255) values Reference sequence chromosome or scaffold
chromStart 3620int(10) unsigned range Start position in chromosome
chromEnd 5792int(10) unsigned range End position in chromosome
name CT025464varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 73smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 88smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      xenTro1.all_mrna.qName (via mrnaOrientInfo.name)
      xenTro1.mgcFullMrna.qName (via mrnaOrientInfo.name)
      xenTro1.mgcGenes.name (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_136205792CT0254642730880
585scaffold_11684423493CR848599116008
585scaffold_11986523496BC1218350130011
585scaffold_12725147717BC0880341426000
73scaffold_165270267716BC1229622313000
588scaffold_1433569449263BC0813751114000
588scaffold_1433632446295CR8555619180380
588scaffold_1444979448402BC160463213000
588scaffold_1458512473179BC16145713360460
588scaffold_1458700473179CU02509313220320

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.