Schema for estOrientInfo
  Database: susScr11    Primary Table: estOrientInfo    Row Count: 1,664,971   Data last updated: 2017-09-03
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 1213smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 82358650int(10) unsigned Start position in chromosome
chromEnd 82359011int(10) unsigned End position in chromosome
name AA056886varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      susScr11.all_est.qName (via estOrientInfo.name)
      susScr11.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
1213chr18235865082359011AA05688600000
1351chr1100445890100450015AA05691330000
1351chr1100475094100475511AA056914000013
2000chr1185588420185588807AA05691800000
2531chr1255158884255159144AA056891000180
717chr101741634617416538AA063650000016
731chr111921983519220338AA05692000000
731chr111921988619220293AA05692100000
909chr124250010242500542AA063653-10000
1006chr125522659955226899AA06366800000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.