Schema for mrnaOrientInfo
  Database: rn5    Primary Table: mrnaOrientInfo    Row Count: 156,853   Data last updated: 2020-08-20
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 297885int(10) unsigned range Start position in chromosome
chromEnd 673237int(10) unsigned range End position in chromosome
name AY539927varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      rn5.all_mrna.qName (via mrnaOrientInfo.name)
      rn5.mgcFullMrna.qName (via mrnaOrientInfo.name)
      rn5.mgcGenes.name (via mrnaOrientInfo.name)
      rn5.refFlat.name (via mrnaOrientInfo.name)
      rn5.refGene.name (via mrnaOrientInfo.name)
      rn5.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
73chr1297885673237AY53992720000
75chr128106043143765BC0790765250450
606chr128108822825886FJ97166450000
606chr128132642825886DQ08354320000
609chr132436023244638AY389467000250
611chr134325423464945BC0884177260440
611chr134337063464912M2668670000
611chr134338343464823D11475700260
611chr134684743478297BC1587567270530
611chr135062763507480FQ226937017000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.