Schema for mrnaOrientInfo
  Database: panTro2    Primary Table: mrnaOrientInfo    Row Count: 6,739   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 592smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 989863int(10) unsigned range Start position in chromosome
chromEnd 1023918int(10) unsigned range End position in chromosome
name AK305466varchar(255) values Accession of EST
intronOrientation 9smallint(6) range Orientation of introns with respect to EST
sizePolyA 18smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      panTro2.all_mrna.qName (via mrnaOrientInfo.name)
      panTro2.refFlat.name (via mrnaOrientInfo.name)
      panTro2.refGene.name (via mrnaOrientInfo.name)
      panTro2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
592chr19898631023918AK305466918000
592chr19898691001088AK306029744000
593chr110894011089490FZ42713700000
74chr111700781189981AK306358517000
594chr112002251204762AF03816580000
594chr112255851231118AK305957416000
594chr112255851231118AK306018422000
594chr112464451253569AK3055261115000
594chr112473311254172AY665280130000
594chr112632871268689AK306494215200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.