Schema for estOrientInfo
  Database: mm10    Primary Table: estOrientInfo    Row Count: 4,388,012   Data last updated: 2017-07-25
Format description: Extra information on ESTs - calculated by polyInfo program
fieldexampleSQL type description
bin 612smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3630793int(10) unsigned Start position in chromosome
chromEnd 3630891int(10) unsigned End position in chromosome
name AA265416varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 1smallint(6) Number of trailing A's on reverse strand
signalPos 25smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      mm10.all_est.qName (via estOrientInfo.name)
      mm10.est.qName (via estOrientInfo.name)
      mm10.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
612chr136307933630891AA265416001250
613chr136762593676652AA96706400000
619chr144909304491409AA433716000025
619chr144921174492456AA02436600000
619chr144921264492417AA01355600000
619chr144924864493274AA959594-10000
619chr144926084493735AA98050810000
619chr144930984493570AA01472902000
619chr144944144494831AA25028500000
619chr144959294496396AA26770700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.