Schema for xenoRefFlat
  Database: hetGla1    Primary Table: xenoRefFlat    Row Count: 541,090   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName Gm12185varchar(255) Name of gene as it appears in genome browser.
name NM_001045540varchar(255) Name of gene
chrom JH185046varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 46int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 260int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 260int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 260int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 46,longblob Exon start positions (or end positions for minus strand item)
exonEnds 260,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hetGla1.xenoMrna.qName (via xenoRefFlat.name)
      hetGla1.xenoRefGene.name (via xenoRefFlat.name)
      hetGla1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Gm12185NM_001045540JH185046-46260260260146,260,
Ksr1NM_001382488JH165689-535671557880615356715578806195356715,5357794,5371140,5372276,5415567,5432601,5444237,5608291,5787938,5356844,5357878,5371260,5372373,5415848,5432664,5444279,5608450,5788061,
zdhhc16bNM_001327799JH174154+7502987504947502987504942750298,750422,750322,750494,
HSPA9NM_004134JH172722-83754860418400586024683754,83802,83996,84551,85286,85924,83784,83967,84549,85281,85922,86041,
HSPA9NM_004134JH169656+4948034974374948204971898494803,495338,496002,496496,497118,497215,497296,497398,495338,495966,496496,496776,497198,497275,497381,497437,
HSPA9NM_004134JH169143-202741532238415332027,3003,4102,2887,4101,4153,
HNF4GNM_004133JH167047+16580718868516582218834411165807,169236,172706,175509,177453,180597,181380,183226,183502,184680,188222,165944,169406,172759,175618,177609,180689,181382,183373,183740,184802,188685,
SORBS1NM_015385JH172822+27475738749527475738425743274757,280031,289170,295455,299342,303581,309963,312192,323949,324118,325921,351076,353852,359667,361363,361623,363127,380203,38 ...274816,280163,289257,295826,299486,303610,310106,312256,323997,324248,326036,351249,353938,359714,361490,361737,363322,380263,38 ...
COG4NM_015386JH172853-3501728354078935020033540778223501728,3501813,3501985,3502336,3502667,3502935,3503949,3504605,3506087,3511848,3513262,3514302,3520535,3523274,3523313,3524168, ...3501764,3501829,3502138,3502465,3502769,3503021,3504030,3504722,3506150,3512014,3513429,3514421,3520669,3523307,3523330,3524326, ...
SORBS1NM_015385JH172166+38944390373903739037138944,39037,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.