Schema for mrnaOrientInfo
  Database: galGal5    Primary Table: mrnaOrientInfo    Row Count: 42,225   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2015int(10) unsigned range Start position in chromosome
chromEnd 3190int(10) unsigned range End position in chromosome
name CR405839varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal5.all_mrna.qName (via mrnaOrientInfo.name)
      galGal5.refFlat.name (via mrnaOrientInfo.name)
      galGal5.refGene.name (via mrnaOrientInfo.name)
      galGal5.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr120153190CR40583920000
585chr174068191BX95059600000
585chr13156939060CR35248050100
585chr17009682103AJ7192841316000
585chr19634598685BX929788-40000
585chr19634698696CR73287240000
585chr198799102698BX93096770000
585chr198800102698BX93316770000
585chr1100642102698BX95054530000
588chr1456694463488X5599840000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.