Schema for estOrientInfo
  Database: gadMor1    Primary Table: estOrientInfo    Row Count: 340,159   Data last updated: 2016-03-30
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom CAEA01000621varchar(255) values Reference sequence chromosome or scaffold
chromStart 1287int(10) unsigned range Start position in chromosome
chromEnd 1428int(10) unsigned range End position in chromosome
name CO541865varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        gadMor1.all_est.qName (via estOrientInfo.name)
      gadMor1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585CAEA0100062112871428CO54186501000
585CAEA01003413857937CO54279300000
585CAEA01005662158853CO54155310000
585CAEA010074781591228CO54176712000
585CAEA01008787911037CO54206130000
585CAEA010139977131418CO5417060100340
585CAEA0101459612121327CO5422060110027
585CAEA01014821194549CO54162921000
585CAEA01015974215892CO54156910000
585CAEA01015974838953CO54167301000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.