Schema for mrnaOrientInfo
  Database: felCat8    Primary Table: mrnaOrientInfo    Row Count: 3,529   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 600smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrA1varchar(255) values Reference sequence chromosome or scaffold
chromStart 2088592int(10) unsigned range Start position in chromosome
chromEnd 2094418int(10) unsigned range End position in chromosome
name JV728505varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        felCat8.all_mrna.qName (via mrnaOrientInfo.name)
      felCat8.refFlat.name (via mrnaOrientInfo.name)
      felCat8.refGene.name (via mrnaOrientInfo.name)
      felCat8.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
600chrA120885922094418JV72850530000
631chrA160426486051803JV72893540000
79chrA167739226819246JV72899670100
640chrA172565587258203JV72924310000
642chrA175249117528729EU28655210000
657chrA195177959522404JV72855840000
10chrA11153379711593319AB1079552414000
673chrA11159616511626253JV72929530000
673chrA11159618211626293JV72929430000
11chrA11775385318006520JV72907930000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.