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Database: droVir1 Primary Table: all_mrna Row Count: 131   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 75 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 1744 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 15 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 7 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 96158 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | L43163 | varchar(255) | values | Query sequence name |
qSize | 1759 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 1759 | int(10) unsigned | range | Alignment end position in query |
tName | scaffold_0 | varchar(255) | values | Target sequence name |
tSize | 8062012 | int(10) unsigned | range | Target sequence size |
tStart | 2459614 | int(10) unsigned | range | Alignment start position in target |
tEnd | 2557531 | int(10) unsigned | range | Alignment end position in target |
blockCount | 8 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 78,9,10,591,120,195,226,530, | longblob | | Size of each block |
qStarts | 0,78,87,97,688,808,1003,1229, | longblob | | Start of each block in query. |
tStarts | 2459614,2459699,2459709,245... | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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75 | 1744 | 15 | 0 | 0 | 0 | 0 | 7 | 96158 | + | L43163 | 1759 | 0 | 1759 | scaffold_0 | 8062012 | 2459614 | 2557531 | 8 | 78,9,10,591,120,195,226,530, | 0,78,87,97,688,808,1003,1229, | 2459614,2459699,2459709,2459720,2493535,2500116,2500408,2557001, |
620 | 1767 | 4 | 28 | 0 | 0 | 0 | 4 | 447 | - | AM113997 | 1804 | 0 | 1799 | scaffold_0 | 8062012 | 4599223 | 4601469 | 5 | 22,397,732,184,464, | 5,27,424,1156,1340, | 4599223,4599246,4599651,4600650,4601005, |
77 | 1128 | 2 | 0 | 0 | 0 | 0 | 8 | 116494 | - | GQ497416 | 1141 | 11 | 1141 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,177,78,99,274,144,80,135,49, | 0,94,271,349,448,722,866,946,1081, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1127 | 3 | 0 | 0 | 0 | 0 | 8 | 116494 | - | GQ497417 | 1141 | 11 | 1141 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,177,78,99,274,144,80,135,49, | 0,94,271,349,448,722,866,946,1081, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1130 | 0 | 0 | 0 | 0 | 0 | 8 | 116494 | - | GQ497418 | 1141 | 11 | 1141 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,177,78,99,274,144,80,135,49, | 0,94,271,349,448,722,866,946,1081, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1127 | 3 | 0 | 0 | 0 | 0 | 8 | 116494 | - | GQ497419 | 1141 | 11 | 1141 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,177,78,99,274,144,80,135,49, | 0,94,271,349,448,722,866,946,1081, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1109 | 3 | 0 | 0 | 0 | 0 | 8 | 116512 | - | GQ497420 | 1123 | 11 | 1123 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,159,78,99,274,144,80,135,49, | 0,94,253,331,430,704,848,928,1063, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1108 | 4 | 0 | 0 | 0 | 0 | 8 | 116512 | - | GQ497421 | 1120 | 8 | 1120 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,159,78,99,274,144,80,135,49, | 0,94,253,331,430,704,848,928,1063, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1107 | 5 | 0 | 0 | 0 | 0 | 8 | 116512 | - | GQ497422 | 1120 | 8 | 1120 | scaffold_0 | 8062012 | 4634028 | 4751652 | 9 | 94,159,78,99,274,144,80,135,49, | 0,94,253,331,430,704,848,928,1063, | 4634028,4634222,4635965,4637224,4637483,4637830,4683833,4704313,4751603, |
77 | 1051 | 1 | 0 | 0 | 0 | 0 | 7 | 116572 | - | GQ497423 | 1063 | 11 | 1063 | scaffold_0 | 8062012 | 4634028 | 4751652 | 8 | 94,177,99,274,144,80,135,49, | 0,94,271,370,644,788,868,1003, | 4634028,4634222,4637224,4637483,4637830,4683833,4704313,4751603, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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