Schema for mrnaOrientInfo
  Database: allMis1    Primary Table: mrnaOrientInfo    Row Count: 211   Data last updated: 2020-05-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AKHW01113626varchar(255) values Reference sequence chromosome or scaffold
chromStart 162int(10) unsigned range Start position in chromosome
chromEnd 242int(10) unsigned range End position in chromosome
name DQ386682varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 18smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        allMis1.all_mrna.qName (via mrnaOrientInfo.name)
      allMis1.refFlat.name (via mrnaOrientInfo.name)
      allMis1.refGene.name (via mrnaOrientInfo.name)
      allMis1.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AKHW01113626162242DQ386682000180
585JH7310728248284504JF26464830000
585JH7312063217256092DQ01015740000
585JH7371992967629759M5938300200
588JH731266398472419771AB3062871116001790
585JH73136098215120163JF26470560000
589JH731360551990558700JF26466920000
586JH731389172159172447EU84847300000
585JH731403645016871AB28053620000
588JH731525433494438234JF26469431000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.