Schema for estOrientInfo
  Database: xenTro9    Primary Table: estOrientInfo    Row Count: 1,277,971   Data last updated: 2017-03-29
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 586smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 179519int(10) unsigned Start position in chromosome
chromEnd 179603int(10) unsigned End position in chromosome
name AL775807varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      xenTro9.all_est.qName (via estOrientInfo.name)
      xenTro9.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chr1179519179603AL77580700000
586chr1253694254242AL80414900000
589chr1628876629283AL80517600000
589chr1651507652146AL65030400000
589chr1654282654626AL97158500000
590chr1655512655826AL67399200000
590chr1655519655826AL63715800200
594chr112325701232644AL86885100000
594chr112339371234011AL86885100000
597chr116007341600786AL68062200000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.