Schema for mrnaOrientInfo
  Database: xenTro2    Primary Table: mrnaOrientInfo    Row Count: 33,808   Data last updated: 2020-09-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_1varchar(255) values Reference sequence chromosome or scaffold
chromStart 17461int(10) unsigned range Start position in chromosome
chromEnd 25279int(10) unsigned range End position in chromosome
name BC082533varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 36smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 61smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      xenTro2.all_mrna.qName (via mrnaOrientInfo.name)
      xenTro2.mgcFullMrna.qName (via mrnaOrientInfo.name)
      xenTro2.mgcGenes.name (via mrnaOrientInfo.name)
      xenTro2.refFlat.name (via mrnaOrientInfo.name)
      xenTro2.refGene.name (via mrnaOrientInfo.name)
      xenTro2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_11746125279BC0825331360610
585scaffold_12006625255BC17100600000
585scaffold_12006625255BC17101200000
585scaffold_12006625279BC1559920141390
585scaffold_12006625279CU0754260160410
585scaffold_15744191595CR92634910170370
585scaffold_15873391599BC1577751014000
73scaffold_1116561215329BC1573483150400
73scaffold_1116642215279BC17109330000
73scaffold_1116642215279BC17109430000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.