Schema for all_est
  Database: sacCer2    Primary Table: all_est    Row Count: 35,005   Data last updated: 2020-09-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 438int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA417516varchar(255) values Query sequence name
qSize 452int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 445int(10) unsigned range Alignment end position in query
tName 2micronvarchar(255) values Target sequence name
tSize 6318int(10) unsigned range Target sequence size
tStart 1277int(10) unsigned range Alignment start position in target
tEnd 1718int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 331,84,13,13,longblob   Size of each block
qStarts 0,332,418,432,longblob   Start of each block in query.
tStarts 1277,1608,1692,1705,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      sacCer2.all_mrna.qName (via all_est.qName)
      sacCer2.est.qName (via all_est.qName)
      sacCer2.estOrientInfo.name (via all_est.qName)
      sacCer2.intronEst.qName (via all_est.qName)
      sacCer2.xenoRefGene.name (via all_est.qName)
      sacCer2.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854382013400+AA41751645204452micron6318127717184331,84,13,13,0,332,418,432,1277,1608,1692,1705,
585442500925315-AA4174794720472chrI23020851172516341114,5,4,12,16,8,13,15,11,20,329,0,23,29,34,54,71,80,94,110,123,143,51172,51194,51199,51203,51221,51237,51245,51258,51273,51284,51305,
58645710071435-AA4174804720472chrI23020814659414705785,4,10,8,10,20,40,361,0,6,11,25,34,46,70,111,146594,146599,146603,146615,146623,146634,146656,146696,
5863810011124+AA4174813907390chrI230208160869161255324,342,16,7,32,374,160869,160896,161239,
5862795030000-AA4174772870287chrI2302081879341882211287,0,187934,
5874500000000-AA4175294500450chrII8131783154223158721450,0,315422,
5873471001211-AA4174503500350chrII813178382319382668246,302,0,48,382319,382366,
588540000000+AA41746654054chrII813178492461492515154,0,492461,
590770000000-AA41744977077chrII813178731439731516177,0,731439,
5903251022200+AA4174753360330chrII8131787685897689173298,10,20,0,299,310,768589,768887,768897,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.