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Database: sacCer2 Primary Table: all_est Row Count: 35,005   Data last updated: 2020-09-01
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 438 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 2 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 1 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 3 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 4 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | AA417516 | varchar(255) | values | Query sequence name |
qSize | 452 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 445 | int(10) unsigned | range | Alignment end position in query |
tName | 2micron | varchar(255) | values | Target sequence name |
tSize | 6318 | int(10) unsigned | range | Target sequence size |
tStart | 1277 | int(10) unsigned | range | Alignment start position in target |
tEnd | 1718 | int(10) unsigned | range | Alignment end position in target |
blockCount | 4 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 331,84,13,13, | longblob | | Size of each block |
qStarts | 0,332,418,432, | longblob | | Start of each block in query. |
tStarts | 1277,1608,1692,1705, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 438 | 2 | 0 | 1 | 3 | 4 | 0 | 0 | + | AA417516 | 452 | 0 | 445 | 2micron | 6318 | 1277 | 1718 | 4 | 331,84,13,13, | 0,332,418,432, | 1277,1608,1692,1705, |
585 | 442 | 5 | 0 | 0 | 9 | 25 | 3 | 15 | - | AA417479 | 472 | 0 | 472 | chrI | 230208 | 51172 | 51634 | 11 | 14,5,4,12,16,8,13,15,11,20,329, | 0,23,29,34,54,71,80,94,110,123,143, | 51172,51194,51199,51203,51221,51237,51245,51258,51273,51284,51305, |
586 | 457 | 1 | 0 | 0 | 7 | 14 | 3 | 5 | - | AA417480 | 472 | 0 | 472 | chrI | 230208 | 146594 | 147057 | 8 | 5,4,10,8,10,20,40,361, | 0,6,11,25,34,46,70,111, | 146594,146599,146603,146615,146623,146634,146656,146696, |
586 | 381 | 0 | 0 | 1 | 1 | 1 | 2 | 4 | + | AA417481 | 390 | 7 | 390 | chrI | 230208 | 160869 | 161255 | 3 | 24,342,16, | 7,32,374, | 160869,160896,161239, |
586 | 279 | 5 | 0 | 3 | 0 | 0 | 0 | 0 | - | AA417477 | 287 | 0 | 287 | chrI | 230208 | 187934 | 188221 | 1 | 287, | 0, | 187934, |
587 | 450 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA417529 | 450 | 0 | 450 | chrII | 813178 | 315422 | 315872 | 1 | 450, | 0, | 315422, |
587 | 347 | 1 | 0 | 0 | 1 | 2 | 1 | 1 | - | AA417450 | 350 | 0 | 350 | chrII | 813178 | 382319 | 382668 | 2 | 46,302, | 0,48, | 382319,382366, |
588 | 54 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | AA417466 | 54 | 0 | 54 | chrII | 813178 | 492461 | 492515 | 1 | 54, | 0, | 492461, |
590 | 77 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | AA417449 | 77 | 0 | 77 | chrII | 813178 | 731439 | 731516 | 1 | 77, | 0, | 731439, |
590 | 325 | 1 | 0 | 2 | 2 | 2 | 0 | 0 | + | AA417475 | 336 | 0 | 330 | chrII | 813178 | 768589 | 768917 | 3 | 298,10,20, | 0,299,310, | 768589,768887,768897, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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