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Database: monDom5 Primary Table: all_est Row Count: 459   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 661 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 623 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 6 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 1 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 1 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 2 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 1674 | int(10) unsigned | range | Number of bases inserted in target |
strand | + | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | DR038220 | varchar(255) | values | Query sequence name |
qSize | 630 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 630 | int(10) unsigned | range | Alignment end position in query |
tName | chr1 | varchar(255) | values | Target sequence name |
tSize | 748055161 | int(10) unsigned | range | Target sequence size |
tStart | 10062383 | int(10) unsigned | range | Alignment start position in target |
tEnd | 10064686 | int(10) unsigned | range | Alignment end position in target |
blockCount | 3 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 343,140,146, | longblob | | Size of each block |
qStarts | 0,344,484, | longblob | | Start of each block in query. |
tStarts | 10062383,10063156,10064540, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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661 | 623 | 6 | 0 | 0 | 1 | 1 | 2 | 1674 | + | DR038220 | 630 | 0 | 630 | chr1 | 748055161 | 10062383 | 10064686 | 3 | 343,140,146, | 0,344,484, | 10062383,10063156,10064540, |
661 | 423 | 4 | 0 | 0 | 0 | 0 | 3 | 10822 | - | DR038222 | 446 | 19 | 446 | chr1 | 748055161 | 10066227 | 10077476 | 4 | 47,177,162,41, | 0,47,224,386, | 10066227,10072139,10076604,10077435, |
662 | 422 | 5 | 0 | 0 | 0 | 0 | 3 | 66745 | - | DR038222 | 446 | 19 | 446 | chr1 | 748055161 | 10098397 | 10165569 | 4 | 47,177,162,41, | 0,47,224,386, | 10098397,10104288,10164698,10165528, |
662 | 625 | 4 | 0 | 0 | 1 | 1 | 2 | 1653 | + | DR038220 | 630 | 0 | 630 | chr1 | 748055161 | 10105749 | 10108031 | 3 | 343,140,146, | 0,344,484, | 10105749,10106522,10107885, |
662 | 508 | 5 | 0 | 0 | 0 | 0 | 4 | 5232 | - | DR038229 | 539 | 26 | 539 | chr1 | 748055161 | 10124266 | 10130011 | 5 | 133,35,161,150,34, | 0,133,168,329,479, | 10124266,10124400,10128723,10129551,10129977, |
662 | 623 | 6 | 0 | 0 | 1 | 1 | 2 | 1673 | + | DR038220 | 630 | 0 | 630 | chr1 | 748055161 | 10146676 | 10148978 | 3 | 343,140,146, | 0,344,484, | 10146676,10147449,10148832, |
1441 | 223 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | + | DR041732 | 252 | 28 | 252 | chr1 | 748055161 | 112235056 | 112235280 | 1 | 224, | 28, | 112235056, |
1575 | 120 | 0 | 77 | 0 | 0 | 0 | 0 | 0 | - | DR038233 | 607 | 0 | 197 | chr1 | 748055161 | 129822008 | 129822205 | 1 | 197, | 410, | 129822008, |
2279 | 102 | 0 | 503 | 0 | 0 | 0 | 0 | 0 | + | DR038230 | 631 | 23 | 628 | chr1 | 748055161 | 222105232 | 222105837 | 1 | 605, | 23, | 222105232, |
3092 | 346 | 6 | 0 | 0 | 0 | 0 | 1 | 1381 | + | DR038237 | 364 | 0 | 352 | chr1 | 748055161 | 328636476 | 328638209 | 2 | 88,264, | 0,88, | 328636476,328637945, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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