Schema for estOrientInfo
  Database: mm7    Primary Table: estOrientInfo    Row Count: 4,640,208   Data last updated: 2016-06-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 612smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3626371int(10) unsigned Start position in chromosome
chromEnd 3626469int(10) unsigned End position in chromosome
name AA265416varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 1smallint(6) Number of trailing A's on reverse strand
signalPos 25smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      mm7.all_est.qName (via estOrientInfo.name)
      mm7.est.qName (via estOrientInfo.name)
      mm7.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
612chr136263713626469AA265416001250
613chr136718373672230AA96706400000
619chr144865224487001AA433716000025
619chr144877094488048AA02436600000
619chr144877184488009AA01355600000
619chr144880784488866AA959594-10000
619chr144882004489327AA98050810000
619chr144886904489162AA01472902000
619chr144900064490423AA25028500000
619chr144915214491988AA26770700000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.