Schema for xenoRefSeqAli
  Database: mm10    Primary Table: xenoRefSeqAli    Row Count: 193,238   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
fieldexampleSQL type info description
bin 1076smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 748int(10) unsigned range Number of bases that match that aren't repeats
misMatches 214int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 10int(10) unsigned range Number of inserts in query
qBaseInsert 1295int(10) unsigned range Number of bases inserted in query
tNumInsert 11int(10) unsigned range Number of inserts in target
tBaseInsert 1628int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_032135varchar(255) values Query sequence name
qSize 3135int(10) unsigned range Query sequence size
qStart 270int(10) unsigned range Alignment start position in query
qEnd 2527int(10) unsigned range Alignment end position in query
tName chr12varchar(255) values Target sequence name
tSize 120129022int(10) unsigned range Target sequence size
tStart 64472045int(10) unsigned range Alignment start position in target
tEnd 64474635int(10) unsigned range Alignment end position in target
blockCount 12int(10) unsigned range Number of blocks in alignment
blockSizes 57,183,153,57,10,27,87,54,2...longblob   Size of each block
qStarts 270,368,680,1167,1255,1286,...longblob   Start of each block in query.
tStarts 55654387,55654485,55654794,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      mm10.all_est.qName (via xenoRefSeqAli.qName)
      mm10.all_mrna.qName (via xenoRefSeqAli.qName)
      mm10.refGene.name (via xenoRefSeqAli.qName)
      mm10.refSeqAli.qName (via xenoRefSeqAli.qName)
      mm10.xenoMrna.qName (via xenoRefSeqAli.qName)
      mm10.xenoRefFlat.name (via xenoRefSeqAli.qName)
      mm10.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
107674821400101295111628+-NM_03213531352702527chr1212012902264472045644746351257,183,153,57,10,27,87,54,24,139,126,45,270,368,680,1167,1255,1286,1341,1800,1949,2105,2244,2482,55654387,55654485,55654794,55655143,55655462,55655661,55655716,55655860,55655928,55655967,55656394,55656932,
763118243001433614454573+-NM_0010119713727143711chr11954719713214479367241321186,17,54,129,58,76,416,200,1046,82,82,63,24,118,34,45,97,52,123,262,197,14,200,220,280,410,468,544,960,1160,2217,2316,2401,2479,2740,2871,2905,2951,3054,3108,3248,3514,191799558,191799745,191799762,191799823,191799952,191800015,191801004,192050070,192255003,192256049,192256133,192256217,19225629 ...
7617701710031473453512+-NM_0010330362343602148chr1195471971321593536713886179,267,262,200,961,72,60,374,644,906,1106,2076,191800583,191800891,191801158,192050070,192255003,192255964,
7611973700063459453816+-NM_0010122582209581970chr1195471971321596536713481039,69,244,45,15,88,195,569,282,21,58,97,241,571,627,661,749,944,1615,1949,191800623,191800665,191800905,191801238,191801303,191801337,192050075,192255003,192255668,192255985,
7613863240021476453620+-NM_00103230729931121969chr119547197132160213671351741,85,255,59,123,200,947,112,153,344,640,699,822,1022,191800620,191800664,191800894,191801214,191801297,192050070,192255003,
768622990043367454169+-NM_0010327141804381535chr119547197132160213671351842,69,258,39,77,202,213,261,38,80,231,566,656,733,935,1274,191800620,191800665,191800900,191801238,191801343,192050070,192255359,192255689,
6133821110041915302+-NM_00107775296684768chr119547197136705533671348639,69,244,45,15,81,84,123,267,597,653,687,191800623,191800665,191800905,191801238,191801303,191801337,
61859736880010319169578+-NM_001195676699106980chr11954719714344153436039220149,31,647,172,11,214,123,813,1222,477,19,253,927,1067,215,158,27,64,44,28,0,149,180,827,999,1010,1224,1355,2168,3390,3886,4049,4305,5247,6314,6613,6775,6836,6906,6952,191111579,191111730,191119123,191119890,191121880,191121897,191122114,191122242,191123058,191124283,191124764,191124903,19112515 ...
618259564400223085214915+-NM_0010030406834636387chr11954719714344605435275926556,174,20,197,104,48,36,61,11,30,36,96,106,479,77,73,187,187,61,530,45,17,5,10,60,33,63,619,793,862,1202,1338,1446,1485,1552,1649,1927,2301,2658,3126,4299,4376,4586,4874,5280,5342,6030,6108,6166,6172,6185,6354,191119212,191119888,191121880,191121943,191122274,191122404,191122506,191122542,191122603,191122703,191122966,191123337,19112369 ...
618340186600232132233953+-NM_001280013646106399chr1195471971434460543528252743,370,179,186,249,105,99,36,66,192,19,29,12,96,54,314,599,20,118,11,72,61,97,315,738,66,121,0,46,429,608,850,1191,1329,1437,1476,1560,1859,1930,2010,2244,2428,2527,2998,3928,3955,4160,4297,4369,4568,4665,5148,6186,6278,191119146,191119189,191119590,191119889,191121943,191122275,191122407,191122506,191122542,191122617,191122913,191122972,19112304 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.