Schema for xenoRefFlat
  Database: mm10    Primary Table: xenoRefFlat    Row Count: 193,238   Data last updated: 2020-08-18
Format description: A gene prediction with additional geneName field.
fieldexampleSQL type info description
geneName CPEB1varchar(255) values Name of gene as it appears in genome browser.
name NM_001365246varchar(255) values Name of gene
chrom chr7varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 81347025int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 81455512int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 81348328int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 81372165int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 19int(10) unsigned range Number of exons
exonStarts 81347025,81347271,81347452,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 81347260,81347427,81348019,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      mm10.xenoMrna.qName (via xenoRefFlat.name)
      mm10.xenoRefGene.name (via xenoRefFlat.name)
      mm10.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CPEB1NM_001365246chr7-813470258145551281348328813721651981347025,81347271,81347452,81348051,81348110,81348274,81349791,81350344,81351741,81355871,81356908,81357304,81359728,81361585,81 ...81347260,81347427,81348019,81348094,81348264,81348439,81349872,81350437,81351939,81356011,81356998,81357418,81359981,81361722,81 ...
CPEB1NM_001365245chr7-813470258145551281348328813721651981347025,81347271,81347452,81348051,81348110,81348274,81349791,81350344,81351741,81355871,81356908,81357304,81359728,81361585,81 ...81347260,81347427,81348019,81348094,81348264,81348439,81349872,81350437,81351939,81356011,81356998,81357418,81359981,81361722,81 ...
Ttc36NM_001005546chr9-44799399448029194479947044802819344799399,44801593,44802710,44799733,44801782,44802919,
Hspa14NM_001004257chr2-3488855351275734889903512690143488855,3489697,3490936,3491520,3494497,3496563,3498021,3499206,3501046,3502493,3502736,3511014,3511173,3512633,3489069,3489768,3491110,3491733,3494600,3496719,3498183,3499310,3501138,3502599,3502785,3511097,3511254,3512757,
NFIANM_001038209chr4+977830819811206097783195981112351597783081,97956373,98000391,98014212,98020826,98041550,98063012,98065280,98081722,98111217,98111360,98111476,98111689,98111801,98 ...97783613,97956439,98000464,98014330,98020954,98041679,98063191,98065444,98081816,98111350,98111428,98111622,98111764,98111942,98 ...
Cyth4NM_001130577chr15+785971857862201478597204786205672178597185,78602689,78605846,78606956,78608125,78609761,78611448,78615712,78618375,78619261,78619788,78620494,78620635,78620814,78 ...78597215,78602775,78605913,78607075,78608206,78609874,78611593,78615828,78618452,78619333,78619943,78620624,78620779,78620841,78 ...
Fam83aNM_001130576chr15+57985902580100875798606158010087457985902,57992906,57995213,58009549,57986541,57993074,57995338,58010087,
NemfNM_001170586chr12-693107226935715869312002693571093969310722,69310953,69311244,69311418,69311479,69311999,69312254,69312424,69312565,69314415,69316243,69316742,69318026,69320372,69 ...69310781,69311127,69311288,69311457,69311940,69312080,69312334,69312468,69312666,69314448,69316438,69316820,69318180,69320420,69 ...
CBFBNM_001191435chr8+1051708011052162231051709751052159268105170801,105170906,105171305,105178592,105194474,105202451,105215903,105215991,105170892,105171053,105171392,105178709,105194591,105202578,105215972,105216223,
MMP15NM_001191434chr8+953527709537358095352868953725201795352770,95352866,95352937,95365311,95366140,95366293,95367927,95368558,95369478,95370132,95370695,95371005,95372104,95372288,95 ...95352833,95352897,95353012,95365460,95366142,95366422,95368235,95368718,95369734,95370271,95370846,95371121,95372288,95372521,95 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.