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Database: calMil1 Primary Table: all_est Row Count: 122,904   Data last updated: 2016-04-10
Format description: Summary info about a patSpace alignment On download server: MariaDB table dump directory
field | example | SQL type | info | description |
bin | 585 | smallint(5) unsigned | range | Indexing field to speed chromosome range queries. |
matches | 508 | int(10) unsigned | range | Number of bases that match that aren't repeats |
misMatches | 3 | int(10) unsigned | range | Number of bases that don't match |
repMatches | 0 | int(10) unsigned | range | Number of bases that match but are part of repeats |
nCount | 0 | int(10) unsigned | range | Number of 'N' bases |
qNumInsert | 0 | int(10) unsigned | range | Number of inserts in query |
qBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in query |
tNumInsert | 0 | int(10) unsigned | range | Number of inserts in target |
tBaseInsert | 0 | int(10) unsigned | range | Number of bases inserted in target |
strand | - | char(2) | values | + or - for strand. First character query, second target (optional) |
qName | JK860342 | varchar(255) | values | Query sequence name |
qSize | 511 | int(10) unsigned | range | Query sequence size |
qStart | 0 | int(10) unsigned | range | Alignment start position in query |
qEnd | 511 | int(10) unsigned | range | Alignment end position in query |
tName | AAVX02039917 | varchar(255) | values | Target sequence name |
tSize | 81585 | int(10) unsigned | range | Target sequence size |
tStart | 79940 | int(10) unsigned | range | Alignment start position in target |
tEnd | 80451 | int(10) unsigned | range | Alignment end position in target |
blockCount | 1 | int(10) unsigned | range | Number of blocks in alignment |
blockSizes | 511, | longblob | | Size of each block |
qStarts | 0, | longblob | | Start of each block in query. |
tStarts | 79940, | longblob | | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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585 | 508 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | - | JK860342 | 511 | 0 | 511 | AAVX02039917 | 81585 | 79940 | 80451 | 1 | 511, | 0, | 79940, |
585 | 644 | 1 | 0 | 0 | 0 | 0 | 2 | 2134 | + | JK953043 | 645 | 0 | 645 | AAVX02040487 | 63407 | 51985 | 54764 | 3 | 90,104,451, | 0,90,194, | 51985,53721,54313, |
585 | 647 | 2 | 0 | 0 | 0 | 0 | 2 | 2134 | + | JK962816 | 649 | 0 | 649 | AAVX02040487 | 63407 | 52034 | 54817 | 3 | 41,104,504, | 0,41,145, | 52034,53721,54313, |
585 | 574 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | JK873452 | 574 | 0 | 574 | AAVX02040487 | 63407 | 54540 | 55114 | 1 | 574, | 0, | 54540, |
585 | 671 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | + | JK923722 | 673 | 0 | 673 | AAVX02040487 | 63407 | 55608 | 56281 | 1 | 673, | 0, | 55608, |
585 | 616 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | + | JK910813 | 620 | 0 | 620 | AAVX02040487 | 63407 | 55661 | 56281 | 1 | 620, | 0, | 55661, |
585 | 665 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | - | JK948054 | 685 | 0 | 668 | AAVX02041197 | 47682 | 26026 | 26694 | 1 | 668, | 17, | 26026, |
585 | 758 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | - | JK949151 | 779 | 1 | 763 | AAVX02041197 | 47682 | 26026 | 26788 | 1 | 762, | 16, | 26026, |
585 | 658 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | - | JK948156 | 678 | 0 | 662 | AAVX02041197 | 47682 | 26027 | 26689 | 1 | 662, | 16, | 26027, |
585 | 706 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | - | JK947659 | 727 | 0 | 711 | AAVX02041197 | 47682 | 26027 | 26738 | 1 | 711, | 16, | 26027, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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