Schema for xenoRefFlat
  Database: tupBel1    Primary Table: xenoRefFlat    Row Count: 845,862   Data last updated: 2020-08-20
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName His4:CG33889varchar(255) Name of gene as it appears in genome browser.
name NM_001032161varchar(255) Name of gene
chrom scaffold_12000.1-47362varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 212int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 525int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 212int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 525int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned Number of exons
exonStarts 212,489,longblob Exon start positions (or end positions for minus strand item)
exonEnds 488,525,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      tupBel1.xenoRefGene.name (via xenoRefFlat.name)
      tupBel1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
His4:CG33889NM_001032161scaffold_12000.1-47362-2125252125252212,489,488,525,
His4:CG33889NM_001032161scaffold_138793.1-125881+85122854348512285434185122,85434,
His2A:CG33832NM_001032160scaffold_11995.1-143015+1180961184431180961184431118096,118443,
KLF12NM_007249scaffold_129225.1-346810-1565129016115651290161415651,132684,172937,290069,15818,132821,173484,290161,
anos1NM_001113688scaffold_57713.1-858+2234482234481223,448,
anos1NM_001113688scaffold_147517.1-17476-876189478761894718761,8947,
SELENOKNM_001114878scaffold_127482.1-580427-5356065362035359175362023535606,535669,535873,535643,535794,536203,
rtgdnfNM_001281402scaffold_141168.1-398392+1031051034171031051034171103105,103417,
POLR2J4NR_003655scaffold_15828.1-546815+2863384805284805284805282286338,480468,286374,480528,
ENTR1NM_006643scaffold_147100.1-5188+332176733217614332,664,1038,1662,444,727,1149,1767,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.