field | example | SQL type | description |
gene1 | 2 | varchar(255) | Gene pair, symbol1 (first in alphabet) |
gene2 | C2 | varchar(255) | Gene pair, symbol2 (second in alphabet) |
linkTypes | ppi | varchar(255) | comma-sep list of pwy (=pathway),ppi (=ppi-db), text. If ppi or pwy: low if low-throughput assay |
pairCount | 0 | int(11) | text mining document count in gene1->gene2 direction |
oppCount | 0 | int(11) | text mining document count in gene2->gene1 direction |
docCount | 0 | int(11) | text mining document count for both directions |
dbList | ophid|hprd | varchar(255) | |-separated list of databases that have curated this gene pair |
minResCount | 3 | int(11) | minimum number of interactions assigned to any paper supporting this interaction. If this value is lower than X, the interaction is considered low-throughput-supported. |
snippet | | longblob | if linkType contains 'text': selected sentence from text-mined results |
context | | longblob | select document contexts (e.g. diseases or pathways) |