Schema for xenoRefSeqAli
  Database: hg19    Primary Table: xenoRefSeqAli    Row Count: 183,060   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1105int(10) unsigned range Number of bases that match that aren't repeats
misMatches 140int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 182int(10) unsigned range Number of bases inserted in query
tNumInsert 10int(10) unsigned range Number of inserts in target
tBaseInsert 8963int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001244483varchar(255) values Query sequence name
qSize 1600int(10) unsigned range Query sequence size
qStart 26int(10) unsigned range Alignment start position in query
qEnd 1453int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 249250621int(10) unsigned range Target sequence size
tStart 14686int(10) unsigned range Alignment start position in target
tEnd 24894int(10) unsigned range Alignment end position in target
blockCount 11int(10) unsigned range Number of blocks in alignment
blockSizes 151,118,147,137,136,198,45,...longblob   Size of each block
qStarts 26,177,295,442,579,715,1081...longblob   Start of each block in query.
tStarts 249225727,249232236,2492325...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg19.all_est.qName (via xenoRefSeqAli.qName)
      hg19.all_mrna.qName (via xenoRefSeqAli.qName)
      hg19.refGene.name (via xenoRefSeqAli.qName)
      hg19.refSeqAli.qName (via xenoRefSeqAli.qName)
      hg19.xenoEst.qName (via xenoRefSeqAli.qName)
      hg19.xenoMrna.qName (via xenoRefSeqAli.qName)
      hg19.xenoRefFlat.name (via xenoRefSeqAli.qName)
      hg19.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851105140003182108963+-NM_0012444831600261453chr1249250621146862489411151,118,147,137,136,198,45,110,71,90,42,26,177,295,442,579,715,1081,1128,1238,1321,1411,249225727,249232236,249232560,249232879,249233253,249233566,249234670,249234716,249235583,249235800,249235893,
585109515600317688951+-NM_00110540619521901617chr1249250621146922489410157,112,147,137,131,208,49,110,71,129,190,347,459,606,743,874,1245,1295,1405,1488,249225727,249232242,249232560,249232879,249233253,249233561,249234667,249234716,249235583,249235800,
58578631800428899051+-NM_0010168542084921484chr1249250621146952485010113,112,143,145,132,141,30,109,71,108,92,205,317,460,605,743,890,1160,1269,1376,249225771,249232242,249232560,249232875,249233257,249233572,249233716,249234717,249235583,249235818,
585785298005309109072+-NM_0010951432053801472chr1249250621146952485011113,112,75,47,145,132,141,30,109,71,108,80,193,305,401,448,593,731,878,1148,1257,1364,249225771,249232242,249232560,249232656,249232875,249233257,249233572,249233716,249234717,249235583,249235818,
585920271004246129006+-NM_0010062452066221459chr1249250621146952489213155,115,144,141,132,144,42,11,4,109,72,23,99,22,177,292,436,577,709,862,1084,1095,1129,1238,1310,1360,249225729,249232242,249232563,249232879,249233257,249233566,249233716,249234673,249234685,249234717,249235583,249235795,24923582 ...
5851041189003204118967+-NM_0011273901885751509chr1249250621146952489212155,112,147,141,69,59,5,188,48,109,71,126,75,230,342,489,630,699,758,763,1140,1191,1300,1383,249225729,249232242,249232560,249232879,249233257,249233329,249233444,249233570,249234667,249234717,249235583,249235800,
58565823200437979002+-NM_00111045017581111380chr124925062114967248598123,149,141,132,138,27,109,71,111,343,492,633,771,921,1200,1309,249225762,249232558,249232879,249233257,249233572,249233716,249234717,249235583,
585601100012041545+-NM_00103409911240815chr124925062134921360772358,253,0,562,249214544,249215447,
5856372690000110497++NM_1463939423909chr124925062152448638512160,746,3,163,52448,63105,
5856262530000110497++NM_0010003679330879chr124925062152451638272157,722,0,157,52451,63105,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.