Schema for knownBlastTab
  Database: hg19    Primary Table: knownBlastTab    Row Count: 9,204,326   Data last updated: 2013-06-17
Format description: Blast alignments to other proteins from this species.
fieldexampleSQL type description
query uc010nxq.1varchar(255) Name of sequence in this assembly (query)
target uc010nxq.1varchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 133int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 133int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 133int(10) unsigned End in target (non-inclusive)
eValue 5.9999999999999996e-77double Expectation value
bitScore 283double Bit score

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via knownBlastTab.query)
      hg19.ccdsKgMap.geneId (via knownBlastTab.query)
      hg19.ceBlastTab.query (via knownBlastTab.query)
      hg19.dmBlastTab.query (via knownBlastTab.query)
      hg19.drBlastTab.query (via knownBlastTab.query)
      hg19.foldUtr3.name (via knownBlastTab.query)
      hg19.foldUtr5.name (via knownBlastTab.query)
      hg19.gnfAtlas2Distance.query (via knownBlastTab.query)
      hg19.gnfAtlas2Distance.target (via knownBlastTab.query)
      hg19.gnfU95Distance.query (via knownBlastTab.query)
      hg19.gnfU95Distance.target (via knownBlastTab.query)
      hg19.humanHprdP2P.query (via knownBlastTab.query)
      hg19.humanHprdP2P.target (via knownBlastTab.query)
      hg19.humanVidalP2P.query (via knownBlastTab.query)
      hg19.humanVidalP2P.target (via knownBlastTab.query)
      hg19.humanWankerP2P.query (via knownBlastTab.query)
      hg19.humanWankerP2P.target (via knownBlastTab.query)
      hg19.keggPathway.kgID (via knownBlastTab.query)
      hg19.kgAlias.kgID (via knownBlastTab.query)
      hg19.kgColor.kgID (via knownBlastTab.query)
      hg19.kgProtAlias.kgID (via knownBlastTab.query)
      hg19.kgProtMap2.qName (via knownBlastTab.query)
      hg19.kgSpAlias.kgID (via knownBlastTab.query)
      hg19.kgTargetAli.qName (via knownBlastTab.query)
      hg19.kgTxInfo.name (via knownBlastTab.query)
      hg19.kgXref.kgID (via knownBlastTab.query)
      hg19.knownCanonToDecipher.name (via knownBlastTab.query)
      hg19.knownCanonical.transcript (via knownBlastTab.query)
      hg19.knownGene.name (via knownBlastTab.query)
      hg19.knownGeneMrna.name (via knownBlastTab.query)
      hg19.knownGenePep.name (via knownBlastTab.query)
      hg19.knownGeneTxMrna.name (via knownBlastTab.query)
      hg19.knownGeneTxPep.name (via knownBlastTab.query)
      hg19.knownIsoforms.transcript (via knownBlastTab.query)
      hg19.knownToAllenBrain.name (via knownBlastTab.query)
      hg19.knownToDecipher.name (via knownBlastTab.query)
      hg19.knownToEnsembl.name (via knownBlastTab.query)
      hg19.knownToGnfAtlas2.name (via knownBlastTab.query)
      hg19.knownToHInv.name (via knownBlastTab.query)
      hg19.knownToHprd.name (via knownBlastTab.query)
      hg19.knownToKeggEntrez.name (via knownBlastTab.query)
      hg19.knownToLocusLink.name (via knownBlastTab.query)
      hg19.knownToLynx.name (via knownBlastTab.query)
      hg19.knownToMupit.name (via knownBlastTab.query)
      hg19.knownToNextProt.name (via knownBlastTab.query)
      hg19.knownToPfam.name (via knownBlastTab.query)
      hg19.knownToRefSeq.name (via knownBlastTab.query)
      hg19.knownToSuper.gene (via knownBlastTab.query)
      hg19.knownToTreefam.name (via knownBlastTab.query)
      hg19.knownToU133.name (via knownBlastTab.query)
      hg19.knownToU133Plus2.name (via knownBlastTab.query)
      hg19.knownToU95.name (via knownBlastTab.query)
      hg19.knownToVisiGene.name (via knownBlastTab.query)
      hg19.knownToWikipedia.name (via knownBlastTab.query)
      hg19.mmBlastTab.query (via knownBlastTab.query)
      hg19.rnBlastTab.query (via knownBlastTab.query)
      hg19.scBlastTab.query (via knownBlastTab.query)
      hg19.ucscScop.ucscId (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc010nxq.1uc010nxq.110013300013301335.9999999999999996e-77283
uc010nxq.1uc010utv.199.2513310013301335.0000000000000004e-76280
uc010nxq.1uc010sdi.197.3111302213301114e-61230
uc010nxq.1uc010yxx.280.3361610610558.999999999999999e-2093.2
uc010nxq.1uc001qvy.142.5910845401080910.000000000262
uc010nxq.1uc001rju.161.11541510544504980.00000000258.5
uc010nxq.1uc001rjs.161.11541510547287760.00000000258.5
uc010nxq.1uc001rjw.261.11541510547528000.00000000258.5
uc010nxq.1uc001rjr.161.11541510547788260.00000000258.5
uc010nxq.1uc001rjv.262.75511310517788230.00000000956.6

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.