Schema for gnfAtlas2Distance
  Database: hg19    Primary Table: gnfAtlas2Distance    Row Count: 54,261,000   Data last updated: 2013-06-14
Format description: Distance between two genes in expression space.
fieldexampleSQL type description
query uc003nru.3varchar(255) Name of one gene
target uc003nru.3varchar(255) Name of other gene
distance 0float Distance in expression space, always >= 0

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg19.ccdsKgMap.geneId (via gnfAtlas2Distance.query)
      hg19.ceBlastTab.query (via gnfAtlas2Distance.query)
      hg19.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg19.drBlastTab.query (via gnfAtlas2Distance.query)
      hg19.foldUtr3.name (via gnfAtlas2Distance.query)
      hg19.foldUtr5.name (via gnfAtlas2Distance.query)
      hg19.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg19.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg19.humanHprdP2P.query (via gnfAtlas2Distance.query)
      hg19.humanHprdP2P.target (via gnfAtlas2Distance.query)
      hg19.humanVidalP2P.query (via gnfAtlas2Distance.query)
      hg19.humanVidalP2P.target (via gnfAtlas2Distance.query)
      hg19.humanWankerP2P.query (via gnfAtlas2Distance.query)
      hg19.humanWankerP2P.target (via gnfAtlas2Distance.query)
      hg19.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg19.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgColor.kgID (via gnfAtlas2Distance.query)
      hg19.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgProtMap2.qName (via gnfAtlas2Distance.query)
      hg19.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      hg19.kgTargetAli.qName (via gnfAtlas2Distance.query)
      hg19.kgTxInfo.name (via gnfAtlas2Distance.query)
      hg19.kgXref.kgID (via gnfAtlas2Distance.query)
      hg19.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg19.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg19.knownCanonToDecipher.name (via gnfAtlas2Distance.query)
      hg19.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg19.knownGene.name (via gnfAtlas2Distance.query)
      hg19.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg19.knownGenePep.name (via gnfAtlas2Distance.query)
      hg19.knownGeneTxMrna.name (via gnfAtlas2Distance.query)
      hg19.knownGeneTxPep.name (via gnfAtlas2Distance.query)
      hg19.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg19.knownToAllenBrain.name (via gnfAtlas2Distance.query)
      hg19.knownToDecipher.name (via gnfAtlas2Distance.query)
      hg19.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg19.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg19.knownToHInv.name (via gnfAtlas2Distance.query)
      hg19.knownToHprd.name (via gnfAtlas2Distance.query)
      hg19.knownToKeggEntrez.name (via gnfAtlas2Distance.query)
      hg19.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg19.knownToLynx.name (via gnfAtlas2Distance.query)
      hg19.knownToMupit.name (via gnfAtlas2Distance.query)
      hg19.knownToNextProt.name (via gnfAtlas2Distance.query)
      hg19.knownToPfam.name (via gnfAtlas2Distance.query)
      hg19.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg19.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg19.knownToTreefam.name (via gnfAtlas2Distance.query)
      hg19.knownToU133.name (via gnfAtlas2Distance.query)
      hg19.knownToU133Plus2.name (via gnfAtlas2Distance.query)
      hg19.knownToU95.name (via gnfAtlas2Distance.query)
      hg19.knownToVisiGene.name (via gnfAtlas2Distance.query)
      hg19.knownToWikipedia.name (via gnfAtlas2Distance.query)
      hg19.mmBlastTab.query (via gnfAtlas2Distance.query)
      hg19.rnBlastTab.query (via gnfAtlas2Distance.query)
      hg19.scBlastTab.query (via gnfAtlas2Distance.query)
      hg19.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
uc003nru.3uc003nru.30
uc003nru.3uc011faf.20
uc003nru.3uc011guu.20
uc003nru.3uc011ikt.20
uc003nru.3uc011fyr.20
uc003nru.3uc003nrw.10.203291
uc003nru.3uc003nrv.30.203291
uc003nru.3uc011dmu.10.203291
uc003nru.3uc011dmt.20.203291
uc003nru.3uc011fai.10.203291

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.