Schema for mrnaOrientInfo
  Database: hetGla1    Primary Table: mrnaOrientInfo    Row Count: 181   Data last updated: 2019-03-14
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH165526varchar(255) values Reference sequence chromosome or scaffold
chromStart 184914int(10) unsigned range Start position in chromosome
chromEnd 195351int(10) unsigned range End position in chromosome
name AB539798varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hetGla1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586JH165526184914195351AB53979850000
597JH16562816019811640829KM48669940000
588JH165636469790482026KM486732640230
587JH165750368525382479HQ3266651180300
75JH16576523324842425040AB53979940000
587JH165766269272278109AB53980030000
74JH16577010827941263968KM486739150000
599JH16577619185781951839HQ326686180000
609JH16577632146783232128HQ32663748000
586JH165791208635213017HQ326658215000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.