Schema for xenoRefFlat
  Database: felCat8    Primary Table: xenoRefFlat    Row Count: 254,234   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName OTUD4varchar(255) values Name of gene as it appears in genome browser.
name NM_001243311varchar(255) values Name of gene
chrom chrB1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 82317873int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 82363396int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 82317907int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 82359646int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 45int(10) unsigned range Number of exons
exonStarts 82317873,82323847,82326376,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 82317994,82323916,82326429,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        felCat8.xenoMrna.qName (via xenoRefFlat.name)
      felCat8.xenoRefGene.name (via xenoRefFlat.name)
      felCat8.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
OTUD4NM_001243311chrB1+823178738236339682317907823596464582317873,82323847,82326376,82333107,82333844,82335219,82336900,82340717,82341082,82341281,82344011,82345366,82345579,82349996,82 ...82317994,82323916,82326429,82333154,82333917,82335300,82337033,82340775,82341193,82341343,82344111,82345465,82345766,82350159,82 ...
SelenosNM_024439chrB3-19693851197047711969444319704756819693851,19693963,19694182,19694339,19695991,19700905,19703854,19704682,19693933,19694149,19694194,19694529,19696160,19701012,19703991,19704771,
PGLYRP4NM_001244284chrA1+359384766835962471601235938,36864,37752,39357,40716,42414,45815,46978,47401,47447,47565,47636,35998,36957,37952,39474,40871,42613,45931,47288,47430,47471,47616,47668,
LOC100065068NM_001317249chrB3-1374607171374652711374607171374652714137460717,137461528,137462970,137464616,137460900,137461670,137463239,137465271,
LOC100065068NM_001317249chrB3_AANG03311634v1_random+171662711716627141716,3748,5317,6087,2371,4017,5459,6271,
Camsap3NM_001347111chrA2-6198273621280861984686212628266198273,6198467,6198869,6199065,6199433,6200011,6200469,6201772,6202174,6202255,6202505,6202688,6202915,6203076,6203309,6203628, ...6198333,6198775,6198982,6199178,6199531,6200047,6200523,6202096,6202216,6202468,6202688,6202885,6203062,6203213,6203376,6203706, ...
Camsap2NM_001347109chrF1+400308134014217640030945401397752940030813,40030892,40052926,40092865,40102188,40112036,40114865,40115316,40123104,40125359,40130049,40130512,40133969,40134461,40 ...40030837,40031084,40053186,40093023,40102276,40112069,40115007,40115456,40123198,40125454,40130120,40132715,40134106,40134682,40 ...
Camsap2NM_001347110chrF1+400308134014217640030945401397752840030813,40030892,40052926,40092865,40102188,40114865,40115316,40123104,40125359,40130049,40130512,40133969,40134461,40135836,40 ...40030837,40031084,40053186,40093023,40102276,40115007,40115456,40123198,40125454,40130120,40132715,40134106,40134682,40135911,40 ...
Nipsnap3bNM_001347099chrD4+66138832661877936613883266186851566138832,66140771,66186595,66186769,66187754,66139046,66140930,66186677,66186860,66187793,
LOC103654814NM_001347108chrC2+12428499112430844312428499112430844313124284991,124289118,124290089,124293546,124294270,124294931,124296767,124298599,124300157,124300815,124306542,124306686,12430835 ...124285129,124289245,124290238,124293649,124294344,124295018,124296863,124298635,124300171,124300944,124306656,124306761,12430844 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.