Schema for all_mrna
  Database: felCat3    Primary Table: all_mrna    Row Count: 4,918   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 412int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 8026int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName JV728516varchar(255) values Query sequence name
qSize 4750int(10) unsigned range Query sequence size
qStart 332int(10) unsigned range Alignment start position in query
qEnd 744int(10) unsigned range Alignment end position in query
tName scaffold_100063varchar(255) values Target sequence name
tSize 43920int(10) unsigned range Target sequence size
tStart 5628int(10) unsigned range Alignment start position in target
tEnd 14066int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 118,105,189,longblob   Size of each block
qStarts 4006,4124,4229,longblob   Start of each block in query.
tStarts 5628,11207,13877,longblob   Start of each block in target.

Connected Tables and Joining Fields
        felCat3.all_est.qName (via all_mrna.qName)
      felCat3.mrnaOrientInfo.name (via all_mrna.qName)
      felCat3.refGene.name (via all_mrna.qName)
      felCat3.refSeqAli.qName (via all_mrna.qName)
      felCat3.xenoMrna.qName (via all_mrna.qName)
      felCat3.xenoRefGene.name (via all_mrna.qName)
      felCat3.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854120000028026-JV7285164750332744scaffold_100063439205628140663118,105,189,4006,4124,4229,5628,11207,13877,
5852410000012127-JV7283901764180421scaffold_10024015041605884262133,108,1343,1476,6058,8318,
5851581001100+AM489518677517677scaffold_1004121021432533412232,127,517,550,3253,3285,
5851831000000+AM746385667483667scaffold_10041210214325334371184,483,3253,
5851822000000+AM746432682495679scaffold_10041210214325334371184,495,3253,
5851852000011+AM746430670475662scaffold_10041210214325334412140,47,475,615,3253,3394,
5851862000000+AM746436661473661scaffold_10041210214325334411188,473,3253,
5851892000000+AM746374455264455scaffold_10041210214325334441191,264,3253,
5851884000000+AM746425606414606scaffold_10041210214325334451192,414,3253,
5851875000000+AM746445610418610scaffold_10041210214325334451192,418,3253,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.