Schema for mrnaOrientInfo
  Database: eriEur2    Primary Table: mrnaOrientInfo    Row Count: 13   Data last updated: 2017-06-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 628smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH835297varchar(255) values Reference sequence chromosome or scaffold
chromStart 5661770int(10) unsigned range Start position in chromosome
chromEnd 5666908int(10) unsigned range End position in chromosome
name JF510477varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        eriEur2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
628JH83529756617705666908JF51047750000
589JH835423643960653967AF251940324000
589JH835423643960653967AJ277290324000
598JH83544117367211781685U3317116230440
586JH835481176955185212AF13482661000
594JH83553812565481257925FJ45549411000
594JH83553812629511263819FJ45547310000
73JH835543365885848984FJ45549403000
585JH83619022505822U331711230440
73JH836190297213401413AF339162430100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.