Schema for xenoRefSeqAli
  Database: droGri1    Primary Table: xenoRefSeqAli    Row Count: 289,713   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 62int(10) unsigned range Number of bases that match that aren't repeats
misMatches 31int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_113003varchar(255) values Query sequence name
qSize 2450int(10) unsigned range Query sequence size
qStart 670int(10) unsigned range Alignment start position in query
qEnd 763int(10) unsigned range Alignment end position in query
tName scaffold_25023varchar(255) values Target sequence name
tSize 3000867int(10) unsigned range Target sequence size
tStart 443452int(10) unsigned range Alignment start position in target
tEnd 443545int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 93,longblob   Size of each block
qStarts 670,longblob   Start of each block in query.
tStarts 2557322,longblob   Start of each block in target.

Connected Tables and Joining Fields
        droGri1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droGri1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droGri1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5886231000000+-NM_1130032450670763scaffold_250233000867443452443545193,670,2557322,
58579180024752928+-NM_00112853777996581230scaffold_100518275651590319,27,51,658,678,1179,237,629,1211,
10274365300107432020896++NM_05753153686854824scaffold_250131417026010471126104954182196,78,147,21,105,153,36,214,557,199,265,206,644,180,204,33,102,94,12,19,31,685,781,943,1194,1288,1402,1585,1870,2084,2641,2840,3105,3311,3955,4135,4366,4399,4525,4759,4771,4793,10471126,10486953,10487088,10487432,10487526,10487637,10488836,10489465,10490323,10491519,10491784,10492649,10492976,10493687,10 ...
741121200422565119645+-NM_00129811049662352615scaffold_25009424613115411431660912633,18,13,15,24,21,235,2118,2144,2157,2516,2594,2585219,2698410,2699070,2699761,2702505,2704967,
585420184000000+-NM_08017373423627scaffold_100575626362542291604,23,1397,
585223122000000+-NM_0011780281029264609scaffold_100575626387742221345,264,1404,
5851266600127159+-NR_033330131779298scaffold_100575626392041712168,24,79,274,1455,1682,
58512942000000+-NM_176479746146317scaffold_100575626392240931171,146,1533,
5858841000000+-NM_0011724431477215344scaffold_100575626399141201129,215,1506,
5856723000000+-NR_0761992961490580scaffold_137651857356446190,490,1411,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.