Schema for mrnaOrientInfo
  Database: panPan1    Primary Table: mrnaOrientInfo    Row Count: 327   Data last updated: 2019-07-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom AJFE01003298varchar(255) values Reference sequence chromosome or scaffold
chromStart 607int(10) unsigned range Start position in chromosome
chromEnd 911int(10) unsigned range End position in chromosome
name AF266733varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      panPan1.all_mrna.qName (via mrnaOrientInfo.name)
      panPan1.refFlat.name (via mrnaOrientInfo.name)
      panPan1.refGene.name (via mrnaOrientInfo.name)
      panPan1.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585AJFE01003298607911AF26673301000
585AJFE01003298607911AF26673401000
585AJFE01003298607911AF26673501000
585AJFE01005987575873AF26673301000
585AJFE01005987575873AF26673401000
585AJFE01005987575873AF26673501000
585AJFE010068149851269AF26673301000
587JH649897302955303036FV52825300000
590JH649897705520705601FV52711700000
590JH649897705520705601HV53406000000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.