Schema for scBlastTab
  Database: mm10    Primary Table: scBlastTab    Row Count: 2,367   Data last updated: 2019-09-20
Format description: Blast alignments of S. cerevisiae genes
fieldexampleSQL type info description
query ENSMUST00000234759.1varchar(255) values Name of sequence in this assembly (query)
target YDR402C_mRNAvarchar(255) values Name of sequence in other assembly (target)
identity 25.34float range Percent identity
aliLength 371int(10) unsigned range Length of alignment
mismatch 231int(10) unsigned range Number of mismatches
gapOpen 17int(10) unsigned range Number of gap openings
qStart 124int(10) unsigned range Start in query (0 based)
qEnd 480int(10) unsigned range End in query (non-inclusive)
tStart 107int(10) unsigned range Start in target (0 based)
tEnd 447int(10) unsigned range End in target (non-inclusive)
eValue 1e-18double range Expectation value
bitScore 89.7double range Bit score

Connected Tables and Joining Fields
        mm10.bioCycPathway.kgID (via scBlastTab.query)
      mm10.ccdsKgMap.geneId (via scBlastTab.query)
      mm10.ceBlastTab.query (via scBlastTab.query)
      mm10.dmBlastTab.query (via scBlastTab.query)
      mm10.drBlastTab.query (via scBlastTab.query)
      mm10.foldUtr3.name (via scBlastTab.query)
      mm10.foldUtr5.name (via scBlastTab.query)
      mm10.hgBlastTab.query (via scBlastTab.query)
      mm10.keggPathway.kgID (via scBlastTab.query)
      mm10.kgAlias.kgID (via scBlastTab.query)
      mm10.kgColor.kgID (via scBlastTab.query)
      mm10.kgProtAlias.kgID (via scBlastTab.query)
      mm10.kgProtMap2.qName (via scBlastTab.query)
      mm10.kgSpAlias.kgID (via scBlastTab.query)
      mm10.kgTargetAli.qName (via scBlastTab.query)
      mm10.kgTxInfo.name (via scBlastTab.query)
      mm10.kgXref.kgID (via scBlastTab.query)
      mm10.knownAttrs.kgID (via scBlastTab.query)
      mm10.knownBlastTab.query (via scBlastTab.query)
      mm10.knownBlastTab.target (via scBlastTab.query)
      mm10.knownCanonical.transcript (via scBlastTab.query)
      mm10.knownCds.name (via scBlastTab.query)
      mm10.knownGene.name (via scBlastTab.query)
      mm10.knownGeneMrna.name (via scBlastTab.query)
      mm10.knownGenePep.name (via scBlastTab.query)
      mm10.knownIsoforms.transcript (via scBlastTab.query)
      mm10.knownToEnsembl.name (via scBlastTab.query)
      mm10.knownToKeggEntrez.name (via scBlastTab.query)
      mm10.knownToLocusLink.name (via scBlastTab.query)
      mm10.knownToLynx.name (via scBlastTab.query)
      mm10.knownToMrna.name (via scBlastTab.query)
      mm10.knownToMrnaSingle.name (via scBlastTab.query)
      mm10.knownToPfam.name (via scBlastTab.query)
      mm10.knownToRefSeq.name (via scBlastTab.query)
      mm10.knownToSuper.gene (via scBlastTab.query)
      mm10.knownToTag.name (via scBlastTab.query)
      mm10.knownToVisiGene.name (via scBlastTab.query)
      mm10.knownToWikipedia.name (via scBlastTab.query)
      mm10.rnBlastTab.query (via scBlastTab.query)
      mm10.ucscScop.ucscId (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENSMUST00000234759.1YDR402C_mRNA25.34371231171244801074471e-1889.7
ENSMUST00000209579.1YDR258C_mRNA36.7632117373086264977912e-52202
ENSMUST00000037023.8YLR388W_mRNA65.45551900550559e-1882.8
ENSMUST00000171010.7YKR062W_mRNA31.391377371602861983250.00000148.5
ENSMUST00000096261.4YDR404C_mRNA42.77173952017101712e-34139
ENSMUST00000072079.8YOR294W_mRNA39.6919494723196102022e-2197.8
ENSMUST00000170895.2YDR454C_mRNA51.891858721319721863e-50192
ENSMUST00000030551.10YDR481C_mRNA32.653401851351379663742e-28122
ENSMUST00000060226.10YGL200C_mRNA33.33189116418201182033e-23103
ENSMUST00000031539.11YMR004W_mRNA27.82591745813301413977e-2093.2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.