Schema for hgBlastTab
  Database: mm10    Primary Table: hgBlastTab    Row Count: 60,899   Data last updated: 2019-10-07
Format description: Blast alignments of Human genes
fieldexampleSQL type info description
query ENSMUST00000070533.4varchar(255) values Name of sequence in this assembly (query)
target ENST00000622811.1varchar(255) values Name of sequence in other assembly (target)
identity 90.77float range Percent identity
aliLength 650int(10) unsigned range Length of alignment
mismatch 57int(10) unsigned range Number of mismatches
gapOpen 2int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 647int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 650int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 1052double range Bit score

Connected Tables and Joining Fields
        mm10.bioCycPathway.kgID (via hgBlastTab.query)
      mm10.ccdsKgMap.geneId (via hgBlastTab.query)
      mm10.ceBlastTab.query (via hgBlastTab.query)
      mm10.dmBlastTab.query (via hgBlastTab.query)
      mm10.drBlastTab.query (via hgBlastTab.query)
      mm10.foldUtr3.name (via hgBlastTab.query)
      mm10.foldUtr5.name (via hgBlastTab.query)
      mm10.keggPathway.kgID (via hgBlastTab.query)
      mm10.kgAlias.kgID (via hgBlastTab.query)
      mm10.kgColor.kgID (via hgBlastTab.query)
      mm10.kgProtAlias.kgID (via hgBlastTab.query)
      mm10.kgProtMap2.qName (via hgBlastTab.query)
      mm10.kgSpAlias.kgID (via hgBlastTab.query)
      mm10.kgTargetAli.qName (via hgBlastTab.query)
      mm10.kgTxInfo.name (via hgBlastTab.query)
      mm10.kgXref.kgID (via hgBlastTab.query)
      mm10.knownAttrs.kgID (via hgBlastTab.query)
      mm10.knownBlastTab.query (via hgBlastTab.query)
      mm10.knownBlastTab.target (via hgBlastTab.query)
      mm10.knownCanonical.transcript (via hgBlastTab.query)
      mm10.knownCds.name (via hgBlastTab.query)
      mm10.knownGene.name (via hgBlastTab.query)
      mm10.knownGeneMrna.name (via hgBlastTab.query)
      mm10.knownGenePep.name (via hgBlastTab.query)
      mm10.knownIsoforms.transcript (via hgBlastTab.query)
      mm10.knownToEnsembl.name (via hgBlastTab.query)
      mm10.knownToKeggEntrez.name (via hgBlastTab.query)
      mm10.knownToLocusLink.name (via hgBlastTab.query)
      mm10.knownToLynx.name (via hgBlastTab.query)
      mm10.knownToMrna.name (via hgBlastTab.query)
      mm10.knownToMrnaSingle.name (via hgBlastTab.query)
      mm10.knownToPfam.name (via hgBlastTab.query)
      mm10.knownToRefSeq.name (via hgBlastTab.query)
      mm10.knownToSuper.gene (via hgBlastTab.query)
      mm10.knownToTag.name (via hgBlastTab.query)
      mm10.knownToVisiGene.name (via hgBlastTab.query)
      mm10.knownToWikipedia.name (via hgBlastTab.query)
      mm10.rnBlastTab.query (via hgBlastTab.query)
      mm10.scBlastTab.query (via hgBlastTab.query)
      mm10.ucscScop.ucscId (via hgBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENSMUST00000070533.4ENST00000622811.190.776505720647065001052
ENSMUST00000208660.1ENST00000637698.175.78140429051013680140002131
ENSMUST00000208660.1ENST00000637698.142.752551432271523114614015e-59228
ENSMUST00000208660.1ENST00000637698.140.622561492111413702585113e-53209
ENSMUST00000194992.6ENST00000220676.281.582664421027502624e-113405
ENSMUST00000027032.5ENST00000220676.260.55215277838020940213902145
ENSMUST00000027035.9ENST00000297316.582.66421642041904142e-144510
ENSMUST00000195555.1ENST00000297316.578.8429353202911284143e-80296
ENSMUST00000192650.5ENST00000297316.577.8133862322354834141e-96351
ENSMUST00000116652.7ENST00000297316.582.66421642041904142e-144510

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.