Schema for knownIsoforms
  Database: mm10    Primary Table: knownIsoforms    Row Count: 142,446   Data last updated: 2019-09-20
Format description: Links together various transcripts of a gene into a cluster
fieldexampleSQL type info description
clusterId 40580int(11) range Unique id for transcript cluster (aka gene)
transcript ENSMUST00000193812.1varchar(255) values Corresponds to name in knownGene table, transcript in knownCanonical

Connected Tables and Joining Fields
        mm10.knownCanonical.clusterId (via knownIsoforms.clusterId)
      mm10.bioCycPathway.kgID (via knownIsoforms.transcript)
      mm10.ccdsKgMap.geneId (via knownIsoforms.transcript)
      mm10.ceBlastTab.query (via knownIsoforms.transcript)
      mm10.dmBlastTab.query (via knownIsoforms.transcript)
      mm10.drBlastTab.query (via knownIsoforms.transcript)
      mm10.foldUtr3.name (via knownIsoforms.transcript)
      mm10.foldUtr5.name (via knownIsoforms.transcript)
      mm10.hgBlastTab.query (via knownIsoforms.transcript)
      mm10.keggPathway.kgID (via knownIsoforms.transcript)
      mm10.kgAlias.kgID (via knownIsoforms.transcript)
      mm10.kgColor.kgID (via knownIsoforms.transcript)
      mm10.kgProtAlias.kgID (via knownIsoforms.transcript)
      mm10.kgProtMap2.qName (via knownIsoforms.transcript)
      mm10.kgSpAlias.kgID (via knownIsoforms.transcript)
      mm10.kgTargetAli.qName (via knownIsoforms.transcript)
      mm10.kgTxInfo.name (via knownIsoforms.transcript)
      mm10.kgXref.kgID (via knownIsoforms.transcript)
      mm10.knownAttrs.kgID (via knownIsoforms.transcript)
      mm10.knownBlastTab.query (via knownIsoforms.transcript)
      mm10.knownBlastTab.target (via knownIsoforms.transcript)
      mm10.knownCanonical.transcript (via knownIsoforms.transcript)
      mm10.knownCds.name (via knownIsoforms.transcript)
      mm10.knownGene.name (via knownIsoforms.transcript)
      mm10.knownGeneMrna.name (via knownIsoforms.transcript)
      mm10.knownGenePep.name (via knownIsoforms.transcript)
      mm10.knownToEnsembl.name (via knownIsoforms.transcript)
      mm10.knownToKeggEntrez.name (via knownIsoforms.transcript)
      mm10.knownToLocusLink.name (via knownIsoforms.transcript)
      mm10.knownToLynx.name (via knownIsoforms.transcript)
      mm10.knownToMrna.name (via knownIsoforms.transcript)
      mm10.knownToMrnaSingle.name (via knownIsoforms.transcript)
      mm10.knownToPfam.name (via knownIsoforms.transcript)
      mm10.knownToRefSeq.name (via knownIsoforms.transcript)
      mm10.knownToSuper.gene (via knownIsoforms.transcript)
      mm10.knownToTag.name (via knownIsoforms.transcript)
      mm10.knownToVisiGene.name (via knownIsoforms.transcript)
      mm10.knownToWikipedia.name (via knownIsoforms.transcript)
      mm10.rnBlastTab.query (via knownIsoforms.transcript)
      mm10.scBlastTab.query (via knownIsoforms.transcript)
      mm10.ucscScop.ucscId (via knownIsoforms.transcript)

Sample Rows
 
clusterIdtranscript
40580ENSMUST00000193812.1
18223ENSMUST00000082908.1
15181ENSMUST00000162897.1
15181ENSMUST00000159265.1
15181ENSMUST00000070533.4
41205ENSMUST00000195335.1
41790ENSMUST00000192336.1
40884ENSMUST00000194099.1
30596ENSMUST00000161581.1
41045ENSMUST00000192973.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.