Schema for mrnaOrientInfo
  Database: braFlo1    Primary Table: mrnaOrientInfo    Row Count: 8,713   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 593smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 1141692int(10) unsigned range Start position in chromosome
chromEnd 1170597int(10) unsigned range End position in chromosome
name EF157660varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        braFlo1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
593chrUn11416921170597EF15766030000
593chrUn11509101152721EF15766040000
598chrUn18185271823320HM04893650000
598chrUn18190621823320HM04893950000
2781chrUn287931220287944022HM04895030000
87chrUn1493091714948911AJ24542981000
2781chrUn287947026287947974HM04894900000
776chrUn2511459425117022DQ644540020000
98chrUn2674660426905866AF30321620100
843chrUn3382101133821634EU581692020000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.