Schema for knownCanonical
  Database: mm10    Primary Table: knownCanonical    Row Count: 55,421   Data last updated: 2019-09-20
Format description: Describes the canonical splice variant of a gene
fieldexampleSQL type info description
chrom chr3varchar(255) values Chromosome
chromStart 108107279int(11) range Start position (0 based). Represents transcription start for + strand genes, end for - strand genes
chromEnd 108146146int(11) range End position (non-inclusive). Represents transcription end for + strand genes, start for - strand genes
clusterId 1int(11) range Which cluster of transcripts this belongs to in knownIsoforms
transcript ENSMUST00000000001.4varchar(255) values Corresponds to knownGene name field.
protein ENSMUSG00000000001.4varchar(255) values Accession of the associated protein, or UCSC ID in newer tables.

Connected Tables and Joining Fields
        mm10.knownIsoforms.clusterId (via knownCanonical.clusterId)
      mm10.bioCycPathway.kgID (via knownCanonical.transcript)
      mm10.ccdsKgMap.geneId (via knownCanonical.transcript)
      mm10.ceBlastTab.query (via knownCanonical.transcript)
      mm10.dmBlastTab.query (via knownCanonical.transcript)
      mm10.drBlastTab.query (via knownCanonical.transcript)
      mm10.foldUtr3.name (via knownCanonical.transcript)
      mm10.foldUtr5.name (via knownCanonical.transcript)
      mm10.hgBlastTab.query (via knownCanonical.transcript)
      mm10.keggPathway.kgID (via knownCanonical.transcript)
      mm10.kgAlias.kgID (via knownCanonical.transcript)
      mm10.kgColor.kgID (via knownCanonical.transcript)
      mm10.kgProtAlias.kgID (via knownCanonical.transcript)
      mm10.kgProtMap2.qName (via knownCanonical.transcript)
      mm10.kgSpAlias.kgID (via knownCanonical.transcript)
      mm10.kgTargetAli.qName (via knownCanonical.transcript)
      mm10.kgTxInfo.name (via knownCanonical.transcript)
      mm10.kgXref.kgID (via knownCanonical.transcript)
      mm10.knownAttrs.kgID (via knownCanonical.transcript)
      mm10.knownBlastTab.query (via knownCanonical.transcript)
      mm10.knownBlastTab.target (via knownCanonical.transcript)
      mm10.knownCds.name (via knownCanonical.transcript)
      mm10.knownGene.name (via knownCanonical.transcript)
      mm10.knownGeneMrna.name (via knownCanonical.transcript)
      mm10.knownGenePep.name (via knownCanonical.transcript)
      mm10.knownIsoforms.transcript (via knownCanonical.transcript)
      mm10.knownToEnsembl.name (via knownCanonical.transcript)
      mm10.knownToKeggEntrez.name (via knownCanonical.transcript)
      mm10.knownToLocusLink.name (via knownCanonical.transcript)
      mm10.knownToLynx.name (via knownCanonical.transcript)
      mm10.knownToMrna.name (via knownCanonical.transcript)
      mm10.knownToMrnaSingle.name (via knownCanonical.transcript)
      mm10.knownToPfam.name (via knownCanonical.transcript)
      mm10.knownToRefSeq.name (via knownCanonical.transcript)
      mm10.knownToSuper.gene (via knownCanonical.transcript)
      mm10.knownToTag.name (via knownCanonical.transcript)
      mm10.knownToVisiGene.name (via knownCanonical.transcript)
      mm10.knownToWikipedia.name (via knownCanonical.transcript)
      mm10.rnBlastTab.query (via knownCanonical.transcript)
      mm10.scBlastTab.query (via knownCanonical.transcript)
      mm10.ucscScop.ucscId (via knownCanonical.transcript)

Sample Rows
 
chromchromStartchromEndclusterIdtranscriptprotein
chr31081072791081461461ENSMUST00000000001.4ENSMUSG00000000001.4
chrX77837900778536232ENSMUST00000000003.13ENSMUSG00000000003.15
chr1618780446188119723ENSMUST00000000028.13ENSMUSG00000000028.15
chr71425755281425781434ENSMUST00000136359.7ENSMUSG00000000031.16
chrX1611627711612581965ENSMUST00000019101.10ENSMUSG00000000037.17
chr111083952921084143966ENSMUST00000000049.5ENSMUSG00000000049.11
chr111212372521212558567ENSMUST00000103015.3ENSMUSG00000000056.7
chr617281184172891158ENSMUST00000000058.6ENSMUSG00000000058.6
chr13586148158703949ENSMUST00000000080.7ENSMUSG00000000078.7
chr412040530612053018410ENSMUST00000000087.12ENSMUSG00000000085.16

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.