Schema for kgTargetAli
  Database: mm10    Primary Table: kgTargetAli    Row Count: 142,446   Data last updated: 2019-09-20
Format description: Summary info about a patSpace alignment
fieldexampleSQL type info description
bin 608smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 868int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 202int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName ENSMUST00000193812.1varchar(255) values Query sequence name
qSize 1070int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1070int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 195471971int(10) unsigned range Target sequence size
tStart 3073252int(10) unsigned range Alignment start position in target
tEnd 3074322int(10) unsigned range Alignment end position in target
blockCount 1int(10) unsigned range Number of blocks in alignment
blockSizes 1070,longblob   Size of each block
qStarts 0,longblob   Start of each block in query.
tStarts 3073252,longblob   Start of each block in target.

Connected Tables and Joining Fields
        mm10.bioCycPathway.kgID (via kgTargetAli.qName)
      mm10.ccdsKgMap.geneId (via kgTargetAli.qName)
      mm10.ceBlastTab.query (via kgTargetAli.qName)
      mm10.dmBlastTab.query (via kgTargetAli.qName)
      mm10.drBlastTab.query (via kgTargetAli.qName)
      mm10.foldUtr3.name (via kgTargetAli.qName)
      mm10.foldUtr5.name (via kgTargetAli.qName)
      mm10.hgBlastTab.query (via kgTargetAli.qName)
      mm10.keggPathway.kgID (via kgTargetAli.qName)
      mm10.kgAlias.kgID (via kgTargetAli.qName)
      mm10.kgColor.kgID (via kgTargetAli.qName)
      mm10.kgProtAlias.kgID (via kgTargetAli.qName)
      mm10.kgProtMap2.qName (via kgTargetAli.qName)
      mm10.kgSpAlias.kgID (via kgTargetAli.qName)
      mm10.kgTxInfo.name (via kgTargetAli.qName)
      mm10.kgXref.kgID (via kgTargetAli.qName)
      mm10.knownAttrs.kgID (via kgTargetAli.qName)
      mm10.knownBlastTab.query (via kgTargetAli.qName)
      mm10.knownBlastTab.target (via kgTargetAli.qName)
      mm10.knownCanonical.transcript (via kgTargetAli.qName)
      mm10.knownCds.name (via kgTargetAli.qName)
      mm10.knownGene.name (via kgTargetAli.qName)
      mm10.knownGeneMrna.name (via kgTargetAli.qName)
      mm10.knownGenePep.name (via kgTargetAli.qName)
      mm10.knownIsoforms.transcript (via kgTargetAli.qName)
      mm10.knownToEnsembl.name (via kgTargetAli.qName)
      mm10.knownToKeggEntrez.name (via kgTargetAli.qName)
      mm10.knownToLocusLink.name (via kgTargetAli.qName)
      mm10.knownToLynx.name (via kgTargetAli.qName)
      mm10.knownToMrna.name (via kgTargetAli.qName)
      mm10.knownToMrnaSingle.name (via kgTargetAli.qName)
      mm10.knownToPfam.name (via kgTargetAli.qName)
      mm10.knownToRefSeq.name (via kgTargetAli.qName)
      mm10.knownToSuper.gene (via kgTargetAli.qName)
      mm10.knownToTag.name (via kgTargetAli.qName)
      mm10.knownToVisiGene.name (via kgTargetAli.qName)
      mm10.knownToWikipedia.name (via kgTargetAli.qName)
      mm10.rnBlastTab.query (via kgTargetAli.qName)
      mm10.scBlastTab.query (via kgTargetAli.qName)
      mm10.ucscScop.ucscId (via kgTargetAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
608868020200000+ENSMUST00000193812.1107001070chr11954719713073252307432211070,0,3073252,
6082608400000+ENSMUST00000082908.11100110chr1195471971310201531021251110,0,3102015,
6093963019000016291-ENSMUST00000162897.1415304153chr11954719713205900321634421417,2736,0,1417,3205900,3213608,
6092819017000016121-ENSMUST00000159265.1298902989chr1195471971320652232156322795,2194,0,795,3206522,3213438,
76320504290002453383-ENSMUST00000070533.4363403634chr11954719713214481367149832487,200,947,0,2487,2687,3214481,3421701,3670551,
6094800000000+ENSMUST00000192857.14800480chr1195471971325275632532361480,0,3252756,
6102686013300000-ENSMUST00000195335.1281902819chr11954719713365730336854912819,0,3365730,
61012330100000000-ENSMUST00000192336.1223302233chr11954719713375555337778812233,0,3375555,
61112890102000000-ENSMUST00000194099.1230902309chr11954719713464976346728512309,0,3464976,
61125000000146717+ENSMUST00000161581.12500250chr1195471971346658635135532101,149,0,101,3466586,3513404,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.